Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zinT and yodB are separated by 342 nucleotides yodB and MCAODC_19860 are separated by 570 nucleotides MCAODC_19860 and MCAODC_19865 are separated by 50 nucleotides
MCAODC_19850: zinT - metal-binding protein ZinT, at 795,101 to 795,772
zinT
MCAODC_19855: yodB - Cytochrome b561-like protein, at 796,115 to 796,645
yodB
MCAODC_19860: MCAODC_19860 - tRNA-Xxx, at 797,216 to 797,305
_19860
MCAODC_19865: MCAODC_19865 - hypothetical protein, at 797,356 to 797,574
_19865
Position (kb) 796
797 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 795.156 kb on + strand at 795.157 kb on - strand at 795.244 kb on + strand, within zinT at 795.245 kb on - strand, within zinT at 795.407 kb on + strand, within zinT at 795.622 kb on + strand, within zinT at 795.688 kb on - strand, within zinT at 795.804 kb on + strand at 795.808 kb on - strand at 795.808 kb on - strand at 795.817 kb on + strand at 795.859 kb on + strand at 795.859 kb on + strand at 795.863 kb on + strand at 795.894 kb on + strand at 795.895 kb on - strand at 795.900 kb on - strand at 795.902 kb on + strand at 796.181 kb on + strand, within yodB at 796.222 kb on + strand, within yodB at 796.223 kb on - strand, within yodB at 796.225 kb on + strand, within yodB at 796.226 kb on - strand, within yodB at 796.226 kb on - strand, within yodB at 796.390 kb on + strand, within yodB at 796.543 kb on + strand, within yodB at 796.550 kb on + strand, within yodB at 796.563 kb on + strand, within yodB at 796.613 kb on - strand at 796.613 kb on - strand at 796.695 kb on - strand at 796.703 kb on - strand at 796.731 kb on + strand at 796.765 kb on + strand at 797.304 kb on - strand at 797.494 kb on - strand, within MCAODC_19865 at 797.506 kb on - strand, within MCAODC_19865
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 795,156 + -3.0 795,157 - -0.9 795,244 + zinT MCAODC_19850 0.21 -0.4 795,245 - zinT MCAODC_19850 0.21 -0.1 795,407 + zinT MCAODC_19850 0.46 -0.8 795,622 + zinT MCAODC_19850 0.78 -1.7 795,688 - zinT MCAODC_19850 0.87 +1.2 795,804 + -0.9 795,808 - -0.7 795,808 - -1.2 795,817 + -2.4 795,859 + -1.1 795,859 + +0.0 795,863 + -1.2 795,894 + -2.0 795,895 - -2.1 795,900 - +0.5 795,902 + +0.9 796,181 + yodB MCAODC_19855 0.12 +2.2 796,222 + yodB MCAODC_19855 0.20 -1.3 796,223 - yodB MCAODC_19855 0.20 -1.2 796,225 + yodB MCAODC_19855 0.21 +1.1 796,226 - yodB MCAODC_19855 0.21 +0.6 796,226 - yodB MCAODC_19855 0.21 +0.6 796,390 + yodB MCAODC_19855 0.52 +0.2 796,543 + yodB MCAODC_19855 0.81 -0.5 796,550 + yodB MCAODC_19855 0.82 +1.1 796,563 + yodB MCAODC_19855 0.84 +1.1 796,613 - +1.6 796,613 - +2.7 796,695 - -2.3 796,703 - -1.1 796,731 + -1.6 796,765 + +1.0 797,304 - -1.2 797,494 - MCAODC_19865 0.63 +0.1 797,506 - MCAODC_19865 0.68 -1.3
Or see this region's nucleotide sequence