Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftnB and yecJ are separated by 79 nucleotides yecJ and azuC are separated by 114 nucleotides azuC and yecR are separated by 261 nucleotides yecR and ftnA are separated by 170 nucleotides ftnA and yecH are separated by 36 nucleotides
MCAODC_19340: ftnB - non-heme ferritin-like protein, at 717,344 to 717,847
ftnB
MCAODC_19345: yecJ - Uncharacterized protein YecJ, at 717,927 to 718,178
yecJ
MCAODC_19350: azuC - stress response protein AzuC, at 718,293 to 718,379
azuC
MCAODC_19355: yecR - Uncharacterized protein YecR, at 718,641 to 718,964
yecR
MCAODC_19360: ftnA - non-heme ferritin, at 719,135 to 719,632
ftnA
MCAODC_19365: yecH - Uncharacterized protein YecH, at 719,669 to 719,908
yecH
Position (kb) 718
719 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 717.654 kb on + strand, within ftnB at 717.654 kb on + strand, within ftnB at 717.787 kb on + strand, within ftnB at 717.787 kb on + strand, within ftnB at 717.787 kb on + strand, within ftnB at 717.851 kb on + strand at 717.851 kb on + strand at 717.851 kb on + strand at 718.028 kb on + strand, within yecJ at 718.028 kb on + strand, within yecJ at 718.087 kb on - strand, within yecJ at 718.210 kb on + strand at 718.211 kb on - strand at 718.212 kb on + strand at 718.305 kb on - strand, within azuC at 718.340 kb on - strand, within azuC at 718.340 kb on - strand, within azuC at 718.344 kb on - strand, within azuC at 718.353 kb on - strand, within azuC at 718.402 kb on - strand at 718.427 kb on + strand at 718.427 kb on + strand at 718.430 kb on - strand at 718.497 kb on - strand at 718.540 kb on - strand at 718.556 kb on - strand at 718.623 kb on + strand at 718.669 kb on + strand at 718.672 kb on + strand at 718.688 kb on + strand, within yecR at 718.688 kb on + strand, within yecR at 718.736 kb on + strand, within yecR at 718.741 kb on + strand, within yecR at 718.741 kb on + strand, within yecR at 718.791 kb on + strand, within yecR at 718.898 kb on - strand, within yecR at 718.908 kb on - strand, within yecR at 718.927 kb on - strand, within yecR at 718.972 kb on - strand at 719.061 kb on - strand at 719.112 kb on + strand at 719.131 kb on + strand at 719.190 kb on - strand, within ftnA at 719.204 kb on + strand, within ftnA at 719.231 kb on + strand, within ftnA at 719.231 kb on + strand, within ftnA at 719.232 kb on - strand, within ftnA at 719.236 kb on + strand, within ftnA at 719.421 kb on + strand, within ftnA at 719.501 kb on + strand, within ftnA at 719.551 kb on + strand, within ftnA at 719.556 kb on + strand, within ftnA at 719.557 kb on - strand, within ftnA at 719.557 kb on - strand, within ftnA at 719.589 kb on - strand at 719.723 kb on - strand, within yecH at 719.849 kb on - strand, within yecH at 719.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 717,654 + ftnB MCAODC_19340 0.62 -0.2 717,654 + ftnB MCAODC_19340 0.62 -0.1 717,787 + ftnB MCAODC_19340 0.88 -2.5 717,787 + ftnB MCAODC_19340 0.88 -2.0 717,787 + ftnB MCAODC_19340 0.88 -1.4 717,851 + -0.3 717,851 + -0.4 717,851 + +0.3 718,028 + yecJ MCAODC_19345 0.40 -1.2 718,028 + yecJ MCAODC_19345 0.40 -0.4 718,087 - yecJ MCAODC_19345 0.63 +0.2 718,210 + +3.0 718,211 - -0.1 718,212 + -2.2 718,305 - azuC MCAODC_19350 0.14 +0.2 718,340 - azuC MCAODC_19350 0.54 -1.7 718,340 - azuC MCAODC_19350 0.54 +0.4 718,344 - azuC MCAODC_19350 0.59 -1.4 718,353 - azuC MCAODC_19350 0.69 -0.7 718,402 - -0.2 718,427 + +0.6 718,427 + -0.8 718,430 - +1.4 718,497 - -0.3 718,540 - -2.3 718,556 - -0.6 718,623 + +2.5 718,669 + +2.9 718,672 + -0.3 718,688 + yecR MCAODC_19355 0.15 +1.5 718,688 + yecR MCAODC_19355 0.15 +1.0 718,736 + yecR MCAODC_19355 0.29 -1.3 718,741 + yecR MCAODC_19355 0.31 +2.9 718,741 + yecR MCAODC_19355 0.31 +0.6 718,791 + yecR MCAODC_19355 0.46 +0.6 718,898 - yecR MCAODC_19355 0.79 -0.7 718,908 - yecR MCAODC_19355 0.82 -1.7 718,927 - yecR MCAODC_19355 0.88 +0.4 718,972 - -0.0 719,061 - +0.1 719,112 + -0.1 719,131 + -0.3 719,190 - ftnA MCAODC_19360 0.11 +0.9 719,204 + ftnA MCAODC_19360 0.14 -0.7 719,231 + ftnA MCAODC_19360 0.19 +0.5 719,231 + ftnA MCAODC_19360 0.19 -1.1 719,232 - ftnA MCAODC_19360 0.19 +0.5 719,236 + ftnA MCAODC_19360 0.20 -1.1 719,421 + ftnA MCAODC_19360 0.57 +0.0 719,501 + ftnA MCAODC_19360 0.73 +1.3 719,551 + ftnA MCAODC_19360 0.84 -0.7 719,556 + ftnA MCAODC_19360 0.85 -0.2 719,557 - ftnA MCAODC_19360 0.85 +0.6 719,557 - ftnA MCAODC_19360 0.85 -1.3 719,589 - +0.9 719,723 - yecH MCAODC_19365 0.23 -0.7 719,849 - yecH MCAODC_19365 0.75 -0.9 719,900 - -1.2
Or see this region's nucleotide sequence