Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_19135 and ruvC are separated by 1 nucleotides ruvC and MCAODC_19145 overlap by 1 nucleotides MCAODC_19145 and MCAODC_19150 overlap by 1 nucleotides MCAODC_19150 and nudB are separated by 28 nucleotides nudB and aspS are separated by 60 nucleotides
MCAODC_19135: MCAODC_19135 - Protein, at 677,448 to 678,050
_19135
MCAODC_19140: ruvC - crossover junction endodeoxyribonuclease RuvC, at 678,052 to 678,573
ruvC
MCAODC_19145: MCAODC_19145 - Crossover junction endodeoxyribonuclease RuvC, at 678,573 to 678,608
_19145
MCAODC_19150: MCAODC_19150 - putative transcriptional regulatory protein YebC, at 678,608 to 679,348
_19150
MCAODC_19155: nudB - dihydroneopterin triphosphate diphosphatase, at 679,377 to 679,886
nudB
MCAODC_19160: aspS - aspartate--tRNA ligase, at 679,947 to 681,719
aspS
Position (kb) 678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 677.934 kb on - strand, within MCAODC_19135 at 678.046 kb on + strand at 678.046 kb on + strand at 678.047 kb on - strand at 678.049 kb on - strand at 678.115 kb on - strand, within ruvC at 678.472 kb on + strand, within ruvC at 678.652 kb on - strand at 678.728 kb on - strand, within MCAODC_19150 at 678.728 kb on - strand, within MCAODC_19150 at 678.856 kb on - strand, within MCAODC_19150 at 678.856 kb on - strand, within MCAODC_19150 at 679.090 kb on - strand, within MCAODC_19150 at 679.090 kb on - strand, within MCAODC_19150 at 679.389 kb on - strand at 679.389 kb on - strand at 679.392 kb on + strand at 679.393 kb on - strand at 679.570 kb on - strand, within nudB at 679.614 kb on + strand, within nudB at 679.615 kb on - strand, within nudB at 679.615 kb on - strand, within nudB at 679.781 kb on - strand, within nudB at 679.814 kb on - strand, within nudB at 679.814 kb on - strand, within nudB at 679.814 kb on - strand, within nudB at 679.814 kb on - strand, within nudB at 679.814 kb on - strand, within nudB at 679.870 kb on + strand at 679.871 kb on - strand at 679.871 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.875 kb on - strand at 679.878 kb on + strand at 679.879 kb on - strand at 679.879 kb on - strand at 679.879 kb on - strand at 679.879 kb on - strand at 679.879 kb on - strand at 679.935 kb on - strand at 679.946 kb on - strand at 679.946 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 677,934 - MCAODC_19135 0.81 -0.3 678,046 + +1.3 678,046 + -0.4 678,047 - -1.1 678,049 - -0.8 678,115 - ruvC MCAODC_19140 0.12 +2.2 678,472 + ruvC MCAODC_19140 0.80 +0.2 678,652 - +1.2 678,728 - MCAODC_19150 0.16 +1.6 678,728 - MCAODC_19150 0.16 +1.0 678,856 - MCAODC_19150 0.33 +0.5 678,856 - MCAODC_19150 0.33 -2.1 679,090 - MCAODC_19150 0.65 +0.1 679,090 - MCAODC_19150 0.65 -0.1 679,389 - -1.1 679,389 - +1.2 679,392 + -0.4 679,393 - +0.5 679,570 - nudB MCAODC_19155 0.38 +0.5 679,614 + nudB MCAODC_19155 0.46 -1.8 679,615 - nudB MCAODC_19155 0.47 -1.1 679,615 - nudB MCAODC_19155 0.47 +0.7 679,781 - nudB MCAODC_19155 0.79 -0.1 679,814 - nudB MCAODC_19155 0.86 -0.3 679,814 - nudB MCAODC_19155 0.86 -1.9 679,814 - nudB MCAODC_19155 0.86 +0.3 679,814 - nudB MCAODC_19155 0.86 -0.5 679,814 - nudB MCAODC_19155 0.86 +2.1 679,870 + +0.7 679,871 - -0.1 679,871 - +0.4 679,875 - -3.3 679,875 - +0.1 679,875 - -0.2 679,875 - -2.6 679,875 - -0.3 679,875 - +0.4 679,875 - +0.0 679,875 - +0.6 679,875 - -0.2 679,875 - +1.7 679,875 - -0.6 679,875 - -1.2 679,878 + +1.7 679,879 - +0.6 679,879 - -0.7 679,879 - +0.0 679,879 - -1.7 679,879 - -0.5 679,935 - +0.7 679,946 - -0.1 679,946 - +0.9
Or see this region's nucleotide sequence