Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeaQ and yoaG are separated by 146 nucleotides yoaG and yeaR are separated by 3 nucleotides yeaR and leuE are separated by 172 nucleotides leuE and dmlR are separated by 126 nucleotides
MCAODC_18760: yeaQ - UPF0410 protein YeaQ, at 609,880 to 610,128
yeaQ
MCAODC_18765: yoaG - Protein YoaG, at 610,275 to 610,457
yoaG
MCAODC_18770: yeaR - Uncharacterized protein YeaR, at 610,461 to 610,820
yeaR
MCAODC_18775: leuE - leucine efflux protein LeuE, at 610,993 to 611,631
leuE
MCAODC_18780: dmlR - DNA-binding transcriptional regulator DmlR, at 611,758 to 612,681
dmlR
Position (kb) 610
611
612 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 610.060 kb on - strand, within yeaQ at 610.183 kb on - strand at 610.273 kb on - strand at 610.276 kb on + strand at 610.277 kb on - strand at 610.313 kb on - strand, within yoaG at 610.313 kb on - strand, within yoaG at 610.441 kb on + strand at 610.441 kb on + strand at 610.442 kb on - strand at 610.544 kb on - strand, within yeaR at 610.548 kb on - strand, within yeaR at 610.548 kb on - strand, within yeaR at 610.658 kb on - strand, within yeaR at 611.083 kb on - strand, within leuE at 611.086 kb on + strand, within leuE at 611.086 kb on + strand, within leuE at 611.086 kb on + strand, within leuE at 611.087 kb on - strand, within leuE at 611.087 kb on - strand, within leuE at 611.116 kb on - strand, within leuE at 611.133 kb on - strand, within leuE at 611.215 kb on + strand, within leuE at 611.231 kb on + strand, within leuE at 611.479 kb on - strand, within leuE at 611.483 kb on - strand, within leuE at 611.502 kb on - strand, within leuE at 611.669 kb on - strand at 611.733 kb on - strand at 611.733 kb on - strand at 611.912 kb on - strand, within dmlR at 611.912 kb on - strand, within dmlR at 611.912 kb on - strand, within dmlR at 611.912 kb on - strand, within dmlR at 612.054 kb on + strand, within dmlR at 612.305 kb on - strand, within dmlR at 612.305 kb on - strand, within dmlR at 612.385 kb on - strand, within dmlR at 612.385 kb on - strand, within dmlR at 612.385 kb on - strand, within dmlR at 612.387 kb on + strand, within dmlR at 612.476 kb on + strand, within dmlR at 612.476 kb on + strand, within dmlR
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 610,060 - yeaQ MCAODC_18760 0.72 -2.4 610,183 - -1.2 610,273 - -1.1 610,276 + +1.9 610,277 - +4.8 610,313 - yoaG MCAODC_18765 0.21 +1.2 610,313 - yoaG MCAODC_18765 0.21 -1.4 610,441 + +2.5 610,441 + +1.1 610,442 - +0.1 610,544 - yeaR MCAODC_18770 0.23 -0.1 610,548 - yeaR MCAODC_18770 0.24 -0.1 610,548 - yeaR MCAODC_18770 0.24 -1.0 610,658 - yeaR MCAODC_18770 0.55 +0.0 611,083 - leuE MCAODC_18775 0.14 +0.1 611,086 + leuE MCAODC_18775 0.15 -0.3 611,086 + leuE MCAODC_18775 0.15 +1.7 611,086 + leuE MCAODC_18775 0.15 +0.5 611,087 - leuE MCAODC_18775 0.15 -0.5 611,087 - leuE MCAODC_18775 0.15 -0.9 611,116 - leuE MCAODC_18775 0.19 +0.9 611,133 - leuE MCAODC_18775 0.22 +0.4 611,215 + leuE MCAODC_18775 0.35 -0.1 611,231 + leuE MCAODC_18775 0.37 +2.8 611,479 - leuE MCAODC_18775 0.76 +1.6 611,483 - leuE MCAODC_18775 0.77 +0.7 611,502 - leuE MCAODC_18775 0.80 +0.8 611,669 - -1.1 611,733 - -0.8 611,733 - -0.5 611,912 - dmlR MCAODC_18780 0.17 +0.1 611,912 - dmlR MCAODC_18780 0.17 -0.1 611,912 - dmlR MCAODC_18780 0.17 +0.3 611,912 - dmlR MCAODC_18780 0.17 -0.9 612,054 + dmlR MCAODC_18780 0.32 +0.9 612,305 - dmlR MCAODC_18780 0.59 +2.1 612,305 - dmlR MCAODC_18780 0.59 -1.9 612,385 - dmlR MCAODC_18780 0.68 -0.1 612,385 - dmlR MCAODC_18780 0.68 +2.1 612,385 - dmlR MCAODC_18780 0.68 -1.6 612,387 + dmlR MCAODC_18780 0.68 +1.2 612,476 + dmlR MCAODC_18780 0.78 +1.7 612,476 + dmlR MCAODC_18780 0.78 -0.3
Or see this region's nucleotide sequence