Strain Fitness in Escherichia coli ECRC101 around MCAODC_18705

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaG and yeaH are separated by 112 nucleotidesyeaH and cdgI are separated by 278 nucleotides MCAODC_18700: yeaG - protein kinase YeaG, at 597,781 to 599,715 yeaG MCAODC_18705: yeaH - UPF0229 protein YeaH, at 599,828 to 601,111 yeaH MCAODC_18710: cdgI - putative diguanylate cyclase CdgI, at 601,390 to 602,733 cdgI Position (kb) 599 600 601 602Strain fitness (log2 ratio) -2 -1 0 1 2 3at 599.090 kb on + strand, within yeaGat 599.090 kb on + strand, within yeaGat 599.091 kb on - strand, within yeaGat 599.122 kb on + strand, within yeaGat 599.122 kb on + strand, within yeaGat 599.201 kb on - strand, within yeaGat 599.252 kb on - strand, within yeaGat 599.301 kb on + strand, within yeaGat 599.703 kb on + strandat 599.703 kb on + strandat 599.704 kb on - strandat 599.798 kb on + strandat 599.798 kb on + strandat 599.798 kb on + strandat 599.798 kb on + strandat 599.799 kb on - strandat 599.799 kb on - strandat 599.827 kb on + strandat 599.827 kb on + strandat 599.828 kb on - strandat 599.840 kb on - strandat 599.904 kb on - strandat 599.905 kb on + strandat 599.906 kb on - strandat 600.272 kb on - strand, within yeaHat 600.292 kb on + strand, within yeaHat 600.483 kb on + strand, within yeaHat 600.483 kb on + strand, within yeaHat 600.529 kb on - strand, within yeaHat 600.543 kb on - strand, within yeaHat 600.657 kb on - strand, within yeaHat 600.678 kb on - strand, within yeaHat 600.679 kb on + strand, within yeaHat 600.698 kb on + strand, within yeaHat 600.698 kb on + strand, within yeaHat 600.698 kb on + strand, within yeaHat 600.712 kb on + strand, within yeaHat 600.713 kb on - strand, within yeaHat 600.821 kb on + strand, within yeaHat 600.942 kb on - strand, within yeaHat 600.948 kb on - strand, within yeaHat 601.054 kb on + strandat 601.055 kb on - strandat 601.102 kb on + strandat 601.103 kb on - strandat 601.184 kb on + strandat 601.204 kb on + strandat 601.204 kb on + strandat 601.907 kb on - strand, within cdgIat 602.072 kb on + strand, within cdgI

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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599,090 + yeaG MCAODC_18700 0.68 +1.0
599,090 + yeaG MCAODC_18700 0.68 -0.9
599,091 - yeaG MCAODC_18700 0.68 +0.6
599,122 + yeaG MCAODC_18700 0.69 -0.8
599,122 + yeaG MCAODC_18700 0.69 -0.3
599,201 - yeaG MCAODC_18700 0.73 -1.3
599,252 - yeaG MCAODC_18700 0.76 +0.4
599,301 + yeaG MCAODC_18700 0.79 +3.2
599,703 + +0.9
599,703 + +0.5
599,704 - +0.2
599,798 + -0.5
599,798 + -2.1
599,798 + -0.7
599,798 + -0.9
599,799 - -1.5
599,799 - -0.4
599,827 + -0.1
599,827 + -0.5
599,828 - +0.3
599,840 - +1.0
599,904 - -2.1
599,905 + +3.3
599,906 - +0.2
600,272 - yeaH MCAODC_18705 0.35 +1.0
600,292 + yeaH MCAODC_18705 0.36 +0.1
600,483 + yeaH MCAODC_18705 0.51 +0.2
600,483 + yeaH MCAODC_18705 0.51 +1.1
600,529 - yeaH MCAODC_18705 0.55 -0.6
600,543 - yeaH MCAODC_18705 0.56 +1.0
600,657 - yeaH MCAODC_18705 0.65 -0.1
600,678 - yeaH MCAODC_18705 0.66 +1.5
600,679 + yeaH MCAODC_18705 0.66 +1.8
600,698 + yeaH MCAODC_18705 0.68 +1.9
600,698 + yeaH MCAODC_18705 0.68 +0.1
600,698 + yeaH MCAODC_18705 0.68 +0.6
600,712 + yeaH MCAODC_18705 0.69 +0.7
600,713 - yeaH MCAODC_18705 0.69 -0.2
600,821 + yeaH MCAODC_18705 0.77 +0.6
600,942 - yeaH MCAODC_18705 0.87 -0.6
600,948 - yeaH MCAODC_18705 0.87 +0.3
601,054 + +0.1
601,055 - +0.6
601,102 + +0.7
601,103 - +0.7
601,184 + +1.1
601,204 + -0.5
601,204 + -0.2
601,907 - cdgI MCAODC_18710 0.38 -0.8
602,072 + cdgI MCAODC_18710 0.51 -0.1

Or see this region's nucleotide sequence