Strain Fitness in Escherichia coli ECRC101 around MCAODC_18590

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntselD and ydjA are separated by 116 nucleotidesydjA and sppA are separated by 160 nucleotides MCAODC_18585: selD - selenide, water dikinase SelD, at 575,745 to 576,788 selD MCAODC_18590: ydjA - NAD(P)H nitroreductase, at 576,905 to 577,456 ydjA MCAODC_18595: sppA - signal peptide peptidase SppA, at 577,617 to 579,473 sppA Position (kb) 576 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 575.947 kb on + strand, within selDat 575.948 kb on - strand, within selDat 575.961 kb on - strand, within selDat 575.994 kb on - strand, within selDat 575.994 kb on - strand, within selDat 575.994 kb on - strand, within selDat 575.994 kb on - strand, within selDat 576.034 kb on + strand, within selDat 576.123 kb on + strand, within selDat 576.211 kb on - strand, within selDat 576.234 kb on - strand, within selDat 576.273 kb on - strand, within selDat 576.410 kb on - strand, within selDat 576.410 kb on - strand, within selDat 576.427 kb on - strand, within selDat 576.564 kb on - strand, within selDat 576.903 kb on + strandat 576.912 kb on + strandat 576.913 kb on - strandat 576.953 kb on - strandat 576.953 kb on - strandat 576.953 kb on - strandat 577.049 kb on + strand, within ydjAat 577.157 kb on - strand, within ydjAat 577.157 kb on - strand, within ydjAat 577.339 kb on + strand, within ydjAat 577.339 kb on + strand, within ydjAat 577.340 kb on - strand, within ydjAat 577.575 kb on + strandat 577.575 kb on + strandat 577.575 kb on + strandat 577.576 kb on - strandat 577.601 kb on + strandat 577.614 kb on + strandat 577.614 kb on + strandat 577.693 kb on + strandat 577.697 kb on + strandat 577.952 kb on + strand, within sppAat 578.006 kb on + strand, within sppAat 578.013 kb on + strand, within sppAat 578.014 kb on - strand, within sppAat 578.079 kb on + strand, within sppAat 578.097 kb on + strand, within sppAat 578.098 kb on - strand, within sppAat 578.238 kb on + strand, within sppAat 578.239 kb on - strand, within sppAat 578.340 kb on - strand, within sppA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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575,947 + selD MCAODC_18585 0.19 -0.9
575,948 - selD MCAODC_18585 0.19 -2.0
575,961 - selD MCAODC_18585 0.21 -0.7
575,994 - selD MCAODC_18585 0.24 -0.4
575,994 - selD MCAODC_18585 0.24 -1.7
575,994 - selD MCAODC_18585 0.24 -0.1
575,994 - selD MCAODC_18585 0.24 -1.6
576,034 + selD MCAODC_18585 0.28 -0.9
576,123 + selD MCAODC_18585 0.36 -1.4
576,211 - selD MCAODC_18585 0.45 -0.4
576,234 - selD MCAODC_18585 0.47 -0.8
576,273 - selD MCAODC_18585 0.51 -3.7
576,410 - selD MCAODC_18585 0.64 +0.4
576,410 - selD MCAODC_18585 0.64 -1.0
576,427 - selD MCAODC_18585 0.65 +0.1
576,564 - selD MCAODC_18585 0.78 +0.5
576,903 + -3.0
576,912 + +0.1
576,913 - -0.3
576,953 - -0.4
576,953 - -3.1
576,953 - -0.7
577,049 + ydjA MCAODC_18590 0.26 +0.3
577,157 - ydjA MCAODC_18590 0.46 +2.4
577,157 - ydjA MCAODC_18590 0.46 +0.4
577,339 + ydjA MCAODC_18590 0.79 -2.4
577,339 + ydjA MCAODC_18590 0.79 +1.3
577,340 - ydjA MCAODC_18590 0.79 +0.9
577,575 + -0.4
577,575 + +1.0
577,575 + -0.3
577,576 - +4.1
577,601 + -0.3
577,614 + +0.2
577,614 + -1.0
577,693 + +1.9
577,697 + +2.2
577,952 + sppA MCAODC_18595 0.18 +0.5
578,006 + sppA MCAODC_18595 0.21 +1.9
578,013 + sppA MCAODC_18595 0.21 -0.1
578,014 - sppA MCAODC_18595 0.21 +0.9
578,079 + sppA MCAODC_18595 0.25 -0.6
578,097 + sppA MCAODC_18595 0.26 +0.2
578,098 - sppA MCAODC_18595 0.26 +0.9
578,238 + sppA MCAODC_18595 0.33 +1.5
578,239 - sppA MCAODC_18595 0.33 +0.5
578,340 - sppA MCAODC_18595 0.39 +0.4

Or see this region's nucleotide sequence