Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_17520 and ydaS overlap by 4 nucleotides ydaS and MCAODC_17530 are separated by 97 nucleotides MCAODC_17530 and MCAODC_17535 are separated by 20 nucleotides MCAODC_17535 and parE are separated by 1 nucleotides parE and MCAODC_17545 are separated by 430 nucleotides
MCAODC_17520: MCAODC_17520 - Rha family transcriptional regulator, at 375,656 to 376,081
_17520
MCAODC_17525: ydaS - Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT, at 376,078 to 376,380
ydaS
MCAODC_17530: MCAODC_17530 - Cro/Cl family transcriptional regulator, at 376,478 to 376,849
_17530
MCAODC_17535: MCAODC_17535 - stability determinant, at 376,870 to 377,061
_17535
MCAODC_17540: parE - plasmid stabilization protein ParE, at 377,063 to 377,341
parE
MCAODC_17545: MCAODC_17545 - hypothetical protein, at 377,772 to 377,972
_17545
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 375.922 kb on + strand, within MCAODC_17520 at 376.100 kb on - strand at 376.132 kb on + strand, within ydaS at 376.133 kb on - strand, within ydaS at 376.133 kb on - strand, within ydaS at 376.133 kb on - strand, within ydaS at 376.133 kb on - strand, within ydaS at 376.167 kb on - strand, within ydaS at 376.179 kb on + strand, within ydaS at 376.179 kb on + strand, within ydaS at 376.179 kb on + strand, within ydaS at 376.180 kb on - strand, within ydaS at 376.213 kb on - strand, within ydaS at 376.217 kb on - strand, within ydaS at 376.217 kb on - strand, within ydaS at 376.245 kb on + strand, within ydaS at 376.265 kb on - strand, within ydaS at 376.266 kb on + strand, within ydaS at 376.267 kb on - strand, within ydaS at 376.267 kb on - strand, within ydaS at 376.267 kb on - strand, within ydaS at 376.267 kb on - strand, within ydaS at 376.267 kb on - strand, within ydaS at 376.267 kb on - strand, within ydaS at 376.267 kb on - strand, within ydaS at 376.294 kb on + strand, within ydaS at 376.298 kb on + strand, within ydaS at 376.298 kb on + strand, within ydaS at 376.298 kb on + strand, within ydaS at 376.299 kb on - strand, within ydaS at 376.310 kb on - strand, within ydaS at 376.372 kb on + strand at 376.373 kb on - strand at 376.380 kb on + strand at 376.380 kb on + strand at 376.380 kb on + strand at 376.380 kb on + strand at 376.381 kb on - strand at 376.852 kb on + strand at 377.031 kb on + strand, within MCAODC_17535 at 377.031 kb on + strand, within MCAODC_17535 at 377.032 kb on - strand, within MCAODC_17535 at 377.095 kb on + strand, within parE at 377.110 kb on + strand, within parE at 377.110 kb on + strand, within parE at 377.110 kb on + strand, within parE at 377.110 kb on + strand, within parE at 377.112 kb on + strand, within parE at 377.112 kb on + strand, within parE at 377.112 kb on + strand, within parE at 377.113 kb on - strand, within parE at 377.116 kb on + strand, within parE at 377.116 kb on + strand, within parE at 377.116 kb on + strand, within parE at 377.120 kb on + strand, within parE at 377.123 kb on - strand, within parE at 377.139 kb on + strand, within parE at 377.139 kb on + strand, within parE at 377.140 kb on - strand, within parE at 377.169 kb on + strand, within parE at 377.169 kb on + strand, within parE at 377.204 kb on + strand, within parE at 377.204 kb on + strand, within parE at 377.205 kb on - strand, within parE at 377.208 kb on + strand, within parE at 377.260 kb on + strand, within parE at 377.260 kb on + strand, within parE at 377.264 kb on + strand, within parE at 377.264 kb on + strand, within parE at 377.264 kb on + strand, within parE at 377.264 kb on + strand, within parE at 377.267 kb on - strand, within parE at 377.268 kb on + strand, within parE at 377.268 kb on + strand, within parE at 377.268 kb on + strand, within parE at 377.268 kb on + strand, within parE at 377.274 kb on + strand, within parE at 377.274 kb on + strand, within parE at 377.355 kb on + strand at 377.526 kb on - strand at 377.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 375,922 + MCAODC_17520 0.62 -1.2 376,100 - -1.5 376,132 + ydaS MCAODC_17525 0.18 +1.8 376,133 - ydaS MCAODC_17525 0.18 -0.7 376,133 - ydaS MCAODC_17525 0.18 -0.7 376,133 - ydaS MCAODC_17525 0.18 -1.3 376,133 - ydaS MCAODC_17525 0.18 +1.3 376,167 - ydaS MCAODC_17525 0.29 -1.4 376,179 + ydaS MCAODC_17525 0.33 +2.0 376,179 + ydaS MCAODC_17525 0.33 +1.5 376,179 + ydaS MCAODC_17525 0.33 -0.4 376,180 - ydaS MCAODC_17525 0.34 -2.4 376,213 - ydaS MCAODC_17525 0.45 -0.7 376,217 - ydaS MCAODC_17525 0.46 -1.6 376,217 - ydaS MCAODC_17525 0.46 -0.9 376,245 + ydaS MCAODC_17525 0.55 -0.3 376,265 - ydaS MCAODC_17525 0.62 -0.8 376,266 + ydaS MCAODC_17525 0.62 -0.8 376,267 - ydaS MCAODC_17525 0.62 +0.0 376,267 - ydaS MCAODC_17525 0.62 -0.7 376,267 - ydaS MCAODC_17525 0.62 +1.4 376,267 - ydaS MCAODC_17525 0.62 -0.3 376,267 - ydaS MCAODC_17525 0.62 -0.7 376,267 - ydaS MCAODC_17525 0.62 -1.1 376,267 - ydaS MCAODC_17525 0.62 -0.6 376,294 + ydaS MCAODC_17525 0.71 +1.2 376,298 + ydaS MCAODC_17525 0.73 +0.1 376,298 + ydaS MCAODC_17525 0.73 -0.6 376,298 + ydaS MCAODC_17525 0.73 -1.3 376,299 - ydaS MCAODC_17525 0.73 -0.5 376,310 - ydaS MCAODC_17525 0.77 -0.8 376,372 + -0.6 376,373 - -0.2 376,380 + -0.4 376,380 + +2.0 376,380 + +1.0 376,380 + +1.9 376,381 - -0.9 376,852 + -0.2 377,031 + MCAODC_17535 0.84 -0.9 377,031 + MCAODC_17535 0.84 +2.9 377,032 - MCAODC_17535 0.84 +1.7 377,095 + parE MCAODC_17540 0.11 +0.9 377,110 + parE MCAODC_17540 0.17 -0.1 377,110 + parE MCAODC_17540 0.17 +0.4 377,110 + parE MCAODC_17540 0.17 +0.3 377,110 + parE MCAODC_17540 0.17 -0.0 377,112 + parE MCAODC_17540 0.18 -0.1 377,112 + parE MCAODC_17540 0.18 -0.6 377,112 + parE MCAODC_17540 0.18 +1.5 377,113 - parE MCAODC_17540 0.18 +0.2 377,116 + parE MCAODC_17540 0.19 +0.7 377,116 + parE MCAODC_17540 0.19 -2.1 377,116 + parE MCAODC_17540 0.19 -0.1 377,120 + parE MCAODC_17540 0.20 -1.9 377,123 - parE MCAODC_17540 0.22 -0.3 377,139 + parE MCAODC_17540 0.27 -0.3 377,139 + parE MCAODC_17540 0.27 +0.9 377,140 - parE MCAODC_17540 0.28 -1.7 377,169 + parE MCAODC_17540 0.38 -1.4 377,169 + parE MCAODC_17540 0.38 -0.1 377,204 + parE MCAODC_17540 0.51 -2.5 377,204 + parE MCAODC_17540 0.51 +1.0 377,205 - parE MCAODC_17540 0.51 +0.8 377,208 + parE MCAODC_17540 0.52 +0.6 377,260 + parE MCAODC_17540 0.71 -0.7 377,260 + parE MCAODC_17540 0.71 +0.7 377,264 + parE MCAODC_17540 0.72 -0.5 377,264 + parE MCAODC_17540 0.72 -0.2 377,264 + parE MCAODC_17540 0.72 +0.2 377,264 + parE MCAODC_17540 0.72 -2.0 377,267 - parE MCAODC_17540 0.73 +1.1 377,268 + parE MCAODC_17540 0.73 +2.4 377,268 + parE MCAODC_17540 0.73 +0.5 377,268 + parE MCAODC_17540 0.73 +2.1 377,268 + parE MCAODC_17540 0.73 -0.6 377,274 + parE MCAODC_17540 0.76 +1.3 377,274 + parE MCAODC_17540 0.76 -1.6 377,355 + -1.2 377,526 - +1.5 377,705 + -0.4
Or see this region's nucleotide sequence