Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_17500 and MCAODC_17505 are separated by 15 nucleotides MCAODC_17505 and dnaC are separated by 126 nucleotides dnaC and MCAODC_17515 are separated by 6 nucleotides MCAODC_17515 and MCAODC_17520 are separated by 22 nucleotides
MCAODC_17500: MCAODC_17500 - DUF977 domain-containing protein, at 372,718 to 373,113
_17500
MCAODC_17505: MCAODC_17505 - DUF1627 domain-containing protein, at 373,129 to 373,797
_17505
MCAODC_17510: dnaC - DNA replication protein DnaC, at 373,924 to 374,664
dnaC
MCAODC_17515: MCAODC_17515 - DNA-binding protein, at 374,671 to 375,633
_17515
MCAODC_17520: MCAODC_17520 - Rha family transcriptional regulator, at 375,656 to 376,081
_17520
Position (kb) 373
374
375 Strain fitness (log2 ratio) -2
-1
0
1
2 at 372.944 kb on + strand, within MCAODC_17500 at 372.947 kb on - strand, within MCAODC_17500 at 372.965 kb on - strand, within MCAODC_17500 at 373.930 kb on - strand at 374.001 kb on + strand, within dnaC at 374.002 kb on - strand, within dnaC at 374.073 kb on + strand, within dnaC at 374.102 kb on - strand, within dnaC at 374.223 kb on - strand, within dnaC at 374.362 kb on - strand, within dnaC at 374.629 kb on - strand at 374.693 kb on - strand at 375.158 kb on - strand, within MCAODC_17515 at 375.259 kb on - strand, within MCAODC_17515 at 375.321 kb on - strand, within MCAODC_17515 at 375.321 kb on - strand, within MCAODC_17515 at 375.375 kb on - strand, within MCAODC_17515 at 375.385 kb on + strand, within MCAODC_17515 at 375.386 kb on - strand, within MCAODC_17515 at 375.386 kb on - strand, within MCAODC_17515 at 375.386 kb on - strand, within MCAODC_17515 at 375.386 kb on - strand, within MCAODC_17515 at 375.386 kb on - strand, within MCAODC_17515 at 375.391 kb on - strand, within MCAODC_17515 at 375.406 kb on - strand, within MCAODC_17515 at 375.657 kb on + strand at 375.658 kb on - strand at 375.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 372,944 + MCAODC_17500 0.57 +0.7 372,947 - MCAODC_17500 0.58 -0.4 372,965 - MCAODC_17500 0.62 +0.3 373,930 - +0.3 374,001 + dnaC MCAODC_17510 0.10 +0.0 374,002 - dnaC MCAODC_17510 0.11 +0.9 374,073 + dnaC MCAODC_17510 0.20 +1.5 374,102 - dnaC MCAODC_17510 0.24 -0.8 374,223 - dnaC MCAODC_17510 0.40 +1.5 374,362 - dnaC MCAODC_17510 0.59 +0.5 374,629 - +0.4 374,693 - +2.0 375,158 - MCAODC_17515 0.51 -0.8 375,259 - MCAODC_17515 0.61 -2.7 375,321 - MCAODC_17515 0.67 +0.5 375,321 - MCAODC_17515 0.67 +0.9 375,375 - MCAODC_17515 0.73 -0.8 375,385 + MCAODC_17515 0.74 +2.2 375,386 - MCAODC_17515 0.74 +1.6 375,386 - MCAODC_17515 0.74 +1.7 375,386 - MCAODC_17515 0.74 +0.3 375,386 - MCAODC_17515 0.74 +0.6 375,386 - MCAODC_17515 0.74 -1.4 375,391 - MCAODC_17515 0.75 +0.8 375,406 - MCAODC_17515 0.76 +0.7 375,657 + +0.4 375,658 - -2.4 375,658 - -2.3
Or see this region's nucleotide sequence