Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_17080 and terB overlap by 4 nucleotides terB and Arg_trna are separated by 169 nucleotides Arg_trna and Ile2_trna are separated by 100 nucleotides Ile2_trna and MCAODC_17100 are separated by 28 nucleotides MCAODC_17100 and MCAODC_17105 are separated by 261 nucleotides MCAODC_17105 and MCAODC_17110 are separated by 224 nucleotides
MCAODC_17080: MCAODC_17080 - DUF3927 domain-containing protein, at 319,762 to 319,929
_17080
MCAODC_17085: terB - tellurite resistance protein, at 319,926 to 320,357
terB
MCAODC_17090: Arg_trna - tRNA-Arg(tct), at 320,527 to 320,603
_trna
MCAODC_17095: Ile2_trna - tRNA-Ile2(cat), at 320,704 to 320,779
_trna
MCAODC_17100: MCAODC_17100 - AraC family transcriptional regulator, at 320,808 to 321,395
_17100
MCAODC_17105: MCAODC_17105 - TrmB family transcriptional regulator, at 321,657 to 321,854
_17105
MCAODC_17110: MCAODC_17110 - antiterminator, at 322,079 to 322,633
_17110
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2 at 320.522 kb on - strand at 320.522 kb on - strand at 320.522 kb on - strand at 320.684 kb on - strand at 320.689 kb on - strand at 320.947 kb on - strand, within MCAODC_17100 at 320.956 kb on - strand, within MCAODC_17100 at 321.044 kb on + strand, within MCAODC_17100 at 321.044 kb on + strand, within MCAODC_17100 at 321.045 kb on - strand, within MCAODC_17100 at 321.055 kb on - strand, within MCAODC_17100 at 321.088 kb on - strand, within MCAODC_17100 at 321.206 kb on + strand, within MCAODC_17100 at 321.323 kb on + strand, within MCAODC_17100 at 321.324 kb on - strand, within MCAODC_17100 at 321.366 kb on - strand at 321.592 kb on + strand at 321.639 kb on - strand at 321.639 kb on - strand at 321.677 kb on - strand, within MCAODC_17105 at 321.692 kb on - strand, within MCAODC_17105 at 322.038 kb on - strand at 322.188 kb on - strand, within MCAODC_17110 at 322.238 kb on - strand, within MCAODC_17110 at 322.258 kb on - strand, within MCAODC_17110 at 322.258 kb on - strand, within MCAODC_17110 at 322.345 kb on + strand, within MCAODC_17110 at 322.346 kb on - strand, within MCAODC_17110
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 320,522 - +0.4 320,522 - -0.7 320,522 - +0.1 320,684 - +1.5 320,689 - +0.3 320,947 - MCAODC_17100 0.24 -0.1 320,956 - MCAODC_17100 0.25 +1.1 321,044 + MCAODC_17100 0.40 +0.6 321,044 + MCAODC_17100 0.40 -0.9 321,045 - MCAODC_17100 0.40 -2.4 321,055 - MCAODC_17100 0.42 +1.3 321,088 - MCAODC_17100 0.48 +0.7 321,206 + MCAODC_17100 0.68 +0.5 321,323 + MCAODC_17100 0.88 +1.1 321,324 - MCAODC_17100 0.88 +0.5 321,366 - +1.1 321,592 + -1.8 321,639 - -2.6 321,639 - +0.4 321,677 - MCAODC_17105 0.10 -0.9 321,692 - MCAODC_17105 0.18 -0.2 322,038 - +0.3 322,188 - MCAODC_17110 0.20 -0.2 322,238 - MCAODC_17110 0.29 +2.6 322,258 - MCAODC_17110 0.32 -0.3 322,258 - MCAODC_17110 0.32 +0.2 322,345 + MCAODC_17110 0.48 -1.1 322,346 - MCAODC_17110 0.48 +0.2
Or see this region's nucleotide sequence