Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_17000 and MCAODC_17005 are separated by 51 nucleotides MCAODC_17005 and MCAODC_17010 are separated by 95 nucleotides MCAODC_17010 and MCAODC_17015 are separated by 5 nucleotides MCAODC_17015 and MCAODC_17020 are separated by 58 nucleotides MCAODC_17020 and MCAODC_17025 overlap by 4 nucleotides MCAODC_17025 and MCAODC_17030 overlap by 4 nucleotides
MCAODC_17000: MCAODC_17000 - phage tail tape measure protein, at 307,502 to 310,744
_17000
MCAODC_17005: MCAODC_17005 - DUF4035 domain-containing protein, at 310,796 to 311,005
_17005
MCAODC_17010: MCAODC_17010 - phage tail protein, at 311,101 to 311,475
_17010
MCAODC_17015: MCAODC_17015 - phage tail protein, at 311,481 to 312,197
_17015
MCAODC_17020: MCAODC_17020 - DUF3168 domain-containing protein, at 312,256 to 312,600
_17020
MCAODC_17025: MCAODC_17025 - phage portal protein, at 312,597 to 313,043
_17025
MCAODC_17030: MCAODC_17030 - phage head closure protein, at 313,040 to 313,390
_17030
Position (kb) 311
312
313 Strain fitness (log2 ratio) -1
0
1
2 at 310.651 kb on - strand at 310.733 kb on + strand at 310.793 kb on + strand at 310.794 kb on - strand at 310.794 kb on - strand at 310.794 kb on - strand at 310.797 kb on + strand at 310.798 kb on - strand at 311.476 kb on - strand at 311.511 kb on - strand at 311.525 kb on + strand at 311.526 kb on - strand at 311.568 kb on - strand, within MCAODC_17015 at 311.569 kb on + strand, within MCAODC_17015 at 311.569 kb on + strand, within MCAODC_17015 at 311.663 kb on + strand, within MCAODC_17015 at 311.664 kb on - strand, within MCAODC_17015 at 311.771 kb on - strand, within MCAODC_17015 at 311.901 kb on - strand, within MCAODC_17015 at 311.908 kb on + strand, within MCAODC_17015 at 311.927 kb on - strand, within MCAODC_17015 at 311.927 kb on - strand, within MCAODC_17015
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 310,651 - +0.6 310,733 + +1.1 310,793 + -1.4 310,794 - +0.7 310,794 - +0.0 310,794 - +0.3 310,797 + -0.2 310,798 - -1.3 311,476 - +0.0 311,511 - -0.5 311,525 + -0.0 311,526 - -0.3 311,568 - MCAODC_17015 0.12 -0.0 311,569 + MCAODC_17015 0.12 +0.1 311,569 + MCAODC_17015 0.12 +0.8 311,663 + MCAODC_17015 0.25 +1.8 311,664 - MCAODC_17015 0.26 -0.1 311,771 - MCAODC_17015 0.40 +1.0 311,901 - MCAODC_17015 0.59 +2.2 311,908 + MCAODC_17015 0.60 -0.8 311,927 - MCAODC_17015 0.62 -0.6 311,927 - MCAODC_17015 0.62 +1.6
Or see this region's nucleotide sequence