Strain Fitness in Escherichia coli ECRC101 around MCAODC_16705

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeQ and ydeR are separated by 59 nucleotidesydeR and ydeS are separated by 12 nucleotidesydeS and fimA are separated by 13 nucleotides MCAODC_16700: ydeQ - Uncharacterized fimbrial-like protein YdeQ, at 245,639 to 246,553 ydeQ MCAODC_16705: ydeR - Uncharacterized fimbrial-like protein YdeR, at 246,613 to 247,116 ydeR MCAODC_16710: ydeS - Uncharacterized fimbrial-like protein YdeS, at 247,129 to 247,659 ydeS MCAODC_16715: fimA - type 1 fimbrial major subunit FimA, at 247,673 to 250,324 fimA Position (kb) 246 247 248Strain fitness (log2 ratio) -2 -1 0 1at 245.650 kb on + strandat 245.746 kb on + strand, within ydeQat 245.984 kb on - strand, within ydeQat 245.984 kb on - strand, within ydeQat 246.218 kb on - strand, within ydeQat 246.362 kb on + strand, within ydeQat 246.408 kb on - strand, within ydeQat 246.440 kb on - strand, within ydeQat 247.036 kb on - strand, within ydeRat 247.088 kb on - strandat 247.215 kb on - strand, within ydeSat 247.316 kb on - strand, within ydeSat 247.628 kb on - strandat 247.894 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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245,650 + -1.1
245,746 + ydeQ MCAODC_16700 0.12 -1.7
245,984 - ydeQ MCAODC_16700 0.38 +0.4
245,984 - ydeQ MCAODC_16700 0.38 -0.7
246,218 - ydeQ MCAODC_16700 0.63 -0.9
246,362 + ydeQ MCAODC_16700 0.79 -1.0
246,408 - ydeQ MCAODC_16700 0.84 -0.4
246,440 - ydeQ MCAODC_16700 0.88 -0.9
247,036 - ydeR MCAODC_16705 0.84 +1.0
247,088 - -1.3
247,215 - ydeS MCAODC_16710 0.16 -2.3
247,316 - ydeS MCAODC_16710 0.35 +0.0
247,628 - -2.0
247,894 + -0.7

Or see this region's nucleotide sequence