Strain Fitness in Escherichia coli ECRC101 around MCAODC_16630

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntddpA and ddpX are separated by 13 nucleotidesddpX and dosP are separated by 257 nucleotidesdosP and dosP overlap by 4 nucleotides MCAODC_16620: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 219,747 to 221,297 ddpA MCAODC_16625: ddpX - D-alanyl-D-alanine dipeptidase, at 221,311 to 221,892 ddpX MCAODC_16630: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 222,150 to 223,301 dosP MCAODC_16635: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 223,298 to 224,539 dosP Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1 2at 221.151 kb on + strandat 221.151 kb on + strandat 221.152 kb on - strandat 221.193 kb on - strandat 221.312 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.341 kb on - strandat 221.605 kb on - strand, within ddpXat 221.631 kb on - strand, within ddpXat 221.631 kb on - strand, within ddpXat 221.631 kb on - strand, within ddpXat 221.631 kb on - strand, within ddpXat 221.685 kb on - strand, within ddpXat 221.694 kb on - strand, within ddpXat 221.768 kb on - strand, within ddpXat 221.799 kb on + strand, within ddpXat 221.982 kb on - strandat 222.053 kb on - strandat 222.424 kb on - strand, within dosPat 222.608 kb on + strand, within dosPat 222.995 kb on + strand, within dosPat 223.193 kb on + strandat 223.363 kb on - strandat 223.426 kb on + strand, within dosPat 223.468 kb on + strand, within dosPat 223.634 kb on + strand, within dosPat 223.859 kb on - strand, within dosP

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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221,151 + +1.4
221,151 + +0.3
221,152 - +0.2
221,193 - -0.1
221,312 + +0.6
221,340 + +0.0
221,340 + -0.1
221,341 - +0.5
221,605 - ddpX MCAODC_16625 0.51 +0.8
221,631 - ddpX MCAODC_16625 0.55 +1.5
221,631 - ddpX MCAODC_16625 0.55 -0.2
221,631 - ddpX MCAODC_16625 0.55 +0.2
221,631 - ddpX MCAODC_16625 0.55 -0.1
221,685 - ddpX MCAODC_16625 0.64 -0.3
221,694 - ddpX MCAODC_16625 0.66 -0.6
221,768 - ddpX MCAODC_16625 0.79 -0.7
221,799 + ddpX MCAODC_16625 0.84 -1.9
221,982 - +1.3
222,053 - +1.9
222,424 - dosP MCAODC_16630 0.24 +0.4
222,608 + dosP MCAODC_16630 0.40 +1.9
222,995 + dosP MCAODC_16630 0.73 -1.1
223,193 + -0.0
223,363 - -0.3
223,426 + dosP MCAODC_16635 0.10 +0.6
223,468 + dosP MCAODC_16635 0.14 +0.1
223,634 + dosP MCAODC_16635 0.27 -1.5
223,859 - dosP MCAODC_16635 0.45 -0.9

Or see this region's nucleotide sequence