Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt potD and ydcT are separated by 17 nucleotides ydcT and potB are separated by 0 nucleotides potB and ydcV overlap by 11 nucleotides
MCAODC_16365: potD - spermidine/putrescine ABC transporter substrate-binding protein, at 164,981 to 166,126
potD
MCAODC_16370: ydcT - Uncharacterized ABC transporter ATP-binding protein YdcT, at 166,144 to 167,157
ydcT
MCAODC_16375: potB - spermidine/putrescine ABC transporter permease, at 167,158 to 168,099
potB
MCAODC_16380: ydcV - Inner membrane ABC transporter permease protein YdcV, at 168,089 to 168,883
ydcV
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2 at 165.432 kb on - strand, within potD at 165.432 kb on - strand, within potD at 165.533 kb on + strand, within potD at 165.549 kb on - strand, within potD at 165.667 kb on + strand, within potD at 165.683 kb on + strand, within potD at 165.846 kb on + strand, within potD at 165.846 kb on + strand, within potD at 165.846 kb on + strand, within potD at 165.847 kb on - strand, within potD at 165.847 kb on - strand, within potD at 165.847 kb on - strand, within potD at 165.985 kb on - strand, within potD at 166.033 kb on - strand at 166.051 kb on + strand at 166.100 kb on + strand at 166.100 kb on + strand at 166.101 kb on - strand at 166.150 kb on + strand at 166.150 kb on + strand at 166.202 kb on + strand at 166.203 kb on - strand at 166.215 kb on + strand at 166.245 kb on + strand at 166.338 kb on + strand, within ydcT at 166.380 kb on + strand, within ydcT at 166.396 kb on + strand, within ydcT at 166.608 kb on - strand, within ydcT at 166.810 kb on + strand, within ydcT at 166.811 kb on - strand, within ydcT at 166.811 kb on - strand, within ydcT at 166.930 kb on - strand, within ydcT at 166.987 kb on + strand, within ydcT at 166.988 kb on - strand, within ydcT at 167.171 kb on + strand at 167.287 kb on + strand, within potB at 167.287 kb on + strand, within potB at 167.327 kb on - strand, within potB at 167.408 kb on - strand, within potB at 167.433 kb on + strand, within potB at 167.488 kb on + strand, within potB at 167.488 kb on + strand, within potB at 167.488 kb on + strand, within potB at 167.489 kb on - strand, within potB at 167.491 kb on - strand, within potB at 167.491 kb on - strand, within potB at 167.500 kb on + strand, within potB at 167.501 kb on - strand, within potB at 167.530 kb on + strand, within potB at 167.592 kb on - strand, within potB at 167.627 kb on + strand, within potB at 167.667 kb on + strand, within potB at 167.667 kb on + strand, within potB at 167.848 kb on + strand, within potB at 167.849 kb on - strand, within potB at 167.957 kb on - strand, within potB at 168.055 kb on + strand at 168.056 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 165,432 - potD MCAODC_16365 0.39 -0.8 165,432 - potD MCAODC_16365 0.39 -0.2 165,533 + potD MCAODC_16365 0.48 -0.5 165,549 - potD MCAODC_16365 0.50 +1.7 165,667 + potD MCAODC_16365 0.60 -2.4 165,683 + potD MCAODC_16365 0.61 -0.7 165,846 + potD MCAODC_16365 0.75 +1.3 165,846 + potD MCAODC_16365 0.75 +0.1 165,846 + potD MCAODC_16365 0.75 -1.0 165,847 - potD MCAODC_16365 0.76 -0.4 165,847 - potD MCAODC_16365 0.76 -0.1 165,847 - potD MCAODC_16365 0.76 +1.6 165,985 - potD MCAODC_16365 0.88 +1.1 166,033 - -0.3 166,051 + +1.5 166,100 + +0.9 166,100 + +0.5 166,101 - -0.2 166,150 + -0.5 166,150 + -1.4 166,202 + -0.1 166,203 - +0.3 166,215 + +0.8 166,245 + -0.7 166,338 + ydcT MCAODC_16370 0.19 +0.5 166,380 + ydcT MCAODC_16370 0.23 +0.5 166,396 + ydcT MCAODC_16370 0.25 -0.8 166,608 - ydcT MCAODC_16370 0.46 +2.1 166,810 + ydcT MCAODC_16370 0.66 +1.6 166,811 - ydcT MCAODC_16370 0.66 -0.7 166,811 - ydcT MCAODC_16370 0.66 +2.4 166,930 - ydcT MCAODC_16370 0.78 +0.7 166,987 + ydcT MCAODC_16370 0.83 +0.8 166,988 - ydcT MCAODC_16370 0.83 +1.0 167,171 + +1.4 167,287 + potB MCAODC_16375 0.14 +1.5 167,287 + potB MCAODC_16375 0.14 -0.3 167,327 - potB MCAODC_16375 0.18 +2.2 167,408 - potB MCAODC_16375 0.27 +0.8 167,433 + potB MCAODC_16375 0.29 -1.0 167,488 + potB MCAODC_16375 0.35 +0.5 167,488 + potB MCAODC_16375 0.35 +0.3 167,488 + potB MCAODC_16375 0.35 +1.5 167,489 - potB MCAODC_16375 0.35 -0.1 167,491 - potB MCAODC_16375 0.35 -0.9 167,491 - potB MCAODC_16375 0.35 -0.1 167,500 + potB MCAODC_16375 0.36 +1.3 167,501 - potB MCAODC_16375 0.36 +0.3 167,530 + potB MCAODC_16375 0.39 -0.9 167,592 - potB MCAODC_16375 0.46 -1.1 167,627 + potB MCAODC_16375 0.50 -1.7 167,667 + potB MCAODC_16375 0.54 +0.6 167,667 + potB MCAODC_16375 0.54 +1.2 167,848 + potB MCAODC_16375 0.73 +0.8 167,849 - potB MCAODC_16375 0.73 +0.0 167,957 - potB MCAODC_16375 0.85 -0.5 168,055 + +0.9 168,056 - +0.1
Or see this region's nucleotide sequence