Strain Fitness in Escherichia coli ECRC101 around MCAODC_15645

Experiment: Control_ECRC101

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrluB and cobO are separated by 39 nucleotidescobO and yciK overlap by 4 nucleotidesyciK and sohB are separated by 219 nucleotides MCAODC_15635: rluB - 23S rRNA pseudouridine(2605) synthase RluB, at 17,549 to 18,421 rluB MCAODC_15640: cobO - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 18,461 to 19,051 cobO MCAODC_15645: yciK - YciK family oxidoreductase, at 19,048 to 19,806 yciK MCAODC_15650: sohB - protease SohB, at 20,026 to 21,075 sohB Position (kb) 19 20Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 18.055 kb on + strand, within rluBat 18.098 kb on + strand, within rluBat 18.168 kb on + strand, within rluBat 18.263 kb on + strand, within rluBat 18.264 kb on - strand, within rluBat 18.409 kb on + strandat 18.412 kb on + strandat 18.429 kb on - strandat 18.456 kb on - strandat 18.463 kb on - strandat 18.552 kb on - strand, within cobOat 18.552 kb on - strand, within cobOat 18.552 kb on - strand, within cobOat 18.612 kb on - strand, within cobOat 18.649 kb on - strand, within cobOat 18.658 kb on + strand, within cobOat 18.659 kb on - strand, within cobOat 18.660 kb on + strand, within cobOat 18.660 kb on + strand, within cobOat 18.661 kb on - strand, within cobOat 18.661 kb on - strand, within cobOat 18.779 kb on - strand, within cobOat 18.860 kb on - strand, within cobOat 19.136 kb on + strand, within yciKat 19.314 kb on - strand, within yciKat 19.314 kb on - strand, within yciKat 19.314 kb on - strand, within yciKat 19.391 kb on - strand, within yciKat 19.394 kb on - strand, within yciKat 19.402 kb on + strand, within yciKat 19.402 kb on + strand, within yciKat 19.420 kb on - strand, within yciKat 19.846 kb on + strandat 19.847 kb on - strandat 19.868 kb on - strandat 19.868 kb on - strandat 19.935 kb on + strandat 19.985 kb on - strandat 20.176 kb on + strand, within sohBat 20.176 kb on + strand, within sohBat 20.176 kb on + strand, within sohBat 20.176 kb on + strand, within sohBat 20.176 kb on + strand, within sohBat 20.176 kb on + strand, within sohBat 20.178 kb on + strand, within sohBat 20.179 kb on - strand, within sohBat 20.349 kb on + strand, within sohBat 20.566 kb on + strand, within sohBat 20.679 kb on + strand, within sohBat 20.710 kb on + strand, within sohBat 20.712 kb on + strand, within sohBat 20.712 kb on + strand, within sohBat 20.718 kb on + strand, within sohBat 20.795 kb on + strand, within sohB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
remove
18,055 + rluB MCAODC_15635 0.58 -0.3
18,098 + rluB MCAODC_15635 0.63 -1.0
18,168 + rluB MCAODC_15635 0.71 -0.7
18,263 + rluB MCAODC_15635 0.82 -0.8
18,264 - rluB MCAODC_15635 0.82 -2.2
18,409 + -0.1
18,412 + +0.3
18,429 - +0.7
18,456 - -0.9
18,463 - +1.3
18,552 - cobO MCAODC_15640 0.15 -0.8
18,552 - cobO MCAODC_15640 0.15 +0.1
18,552 - cobO MCAODC_15640 0.15 +1.5
18,612 - cobO MCAODC_15640 0.26 +0.5
18,649 - cobO MCAODC_15640 0.32 +0.1
18,658 + cobO MCAODC_15640 0.33 +1.2
18,659 - cobO MCAODC_15640 0.34 -0.3
18,660 + cobO MCAODC_15640 0.34 -0.8
18,660 + cobO MCAODC_15640 0.34 -0.5
18,661 - cobO MCAODC_15640 0.34 -1.5
18,661 - cobO MCAODC_15640 0.34 +1.2
18,779 - cobO MCAODC_15640 0.54 +3.5
18,860 - cobO MCAODC_15640 0.68 +1.1
19,136 + yciK MCAODC_15645 0.12 +0.5
19,314 - yciK MCAODC_15645 0.35 -0.5
19,314 - yciK MCAODC_15645 0.35 -1.4
19,314 - yciK MCAODC_15645 0.35 +0.6
19,391 - yciK MCAODC_15645 0.45 +1.6
19,394 - yciK MCAODC_15645 0.46 +1.5
19,402 + yciK MCAODC_15645 0.47 +4.1
19,402 + yciK MCAODC_15645 0.47 +2.2
19,420 - yciK MCAODC_15645 0.49 -1.7
19,846 + +0.8
19,847 - -0.8
19,868 - +0.7
19,868 - +0.5
19,935 + -0.8
19,985 - -0.6
20,176 + sohB MCAODC_15650 0.14 -2.0
20,176 + sohB MCAODC_15650 0.14 -1.1
20,176 + sohB MCAODC_15650 0.14 -0.0
20,176 + sohB MCAODC_15650 0.14 -1.7
20,176 + sohB MCAODC_15650 0.14 +0.7
20,176 + sohB MCAODC_15650 0.14 +1.4
20,178 + sohB MCAODC_15650 0.14 +0.5
20,179 - sohB MCAODC_15650 0.15 -1.9
20,349 + sohB MCAODC_15650 0.31 +1.6
20,566 + sohB MCAODC_15650 0.51 -0.6
20,679 + sohB MCAODC_15650 0.62 +0.1
20,710 + sohB MCAODC_15650 0.65 -0.3
20,712 + sohB MCAODC_15650 0.65 -1.2
20,712 + sohB MCAODC_15650 0.65 -0.3
20,718 + sohB MCAODC_15650 0.66 +2.5
20,795 + sohB MCAODC_15650 0.73 -2.9

Or see this region's nucleotide sequence