Strain Fitness in Escherichia coli ECRC101 around MCAODC_15335

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and ehxC are separated by 540 nucleotidesehxC and ehxA are separated by 1 nucleotides MCAODC_15330: tnp-IS3 - IS3 family transposase, at 51,008 to 51,661 tnp-IS3 MCAODC_15335: ehxC - enterohemolysin-activating lysine-acyltransferase EhxC, at 52,202 to 52,717 ehxC MCAODC_15340: ehxA - enterohemolysin EhxA, at 52,719 to 55,715 ehxA Position (kb) 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.206 kb on + strand, within tnp-IS3at 51.206 kb on + strand, within tnp-IS3at 51.206 kb on + strand, within tnp-IS3at 51.206 kb on + strand, within tnp-IS3at 51.206 kb on + strand, within tnp-IS3at 51.206 kb on + strand, within tnp-IS3at 51.207 kb on - strand, within tnp-IS3at 51.207 kb on - strand, within tnp-IS3at 51.207 kb on - strand, within tnp-IS3at 51.207 kb on - strand, within tnp-IS3at 51.207 kb on - strand, within tnp-IS3at 51.246 kb on + strand, within tnp-IS3at 51.365 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.367 kb on + strand, within tnp-IS3at 51.368 kb on - strand, within tnp-IS3at 51.368 kb on - strand, within tnp-IS3at 51.368 kb on - strand, within tnp-IS3at 51.368 kb on - strand, within tnp-IS3at 51.368 kb on - strand, within tnp-IS3at 51.390 kb on + strand, within tnp-IS3at 51.390 kb on + strand, within tnp-IS3at 51.390 kb on + strand, within tnp-IS3at 51.391 kb on - strand, within tnp-IS3at 51.391 kb on - strand, within tnp-IS3at 51.507 kb on - strand, within tnp-IS3at 51.537 kb on + strand, within tnp-IS3at 51.537 kb on + strand, within tnp-IS3at 51.537 kb on + strand, within tnp-IS3at 51.537 kb on + strand, within tnp-IS3at 51.545 kb on + strand, within tnp-IS3at 51.545 kb on + strand, within tnp-IS3at 51.546 kb on - strand, within tnp-IS3at 51.546 kb on - strand, within tnp-IS3at 51.546 kb on - strand, within tnp-IS3at 51.547 kb on + strand, within tnp-IS3at 51.547 kb on + strand, within tnp-IS3at 51.547 kb on + strand, within tnp-IS3at 51.548 kb on - strand, within tnp-IS3at 51.548 kb on - strand, within tnp-IS3at 51.548 kb on - strand, within tnp-IS3at 51.548 kb on - strand, within tnp-IS3at 51.557 kb on + strand, within tnp-IS3at 51.560 kb on + strand, within tnp-IS3at 51.560 kb on + strand, within tnp-IS3at 51.560 kb on + strand, within tnp-IS3at 51.560 kb on + strand, within tnp-IS3at 51.561 kb on - strand, within tnp-IS3at 51.584 kb on + strand, within tnp-IS3at 51.587 kb on - strand, within tnp-IS3at 51.587 kb on - strand, within tnp-IS3at 51.666 kb on + strandat 51.666 kb on + strandat 51.666 kb on + strandat 51.667 kb on - strandat 51.667 kb on - strandat 51.694 kb on + strandat 51.694 kb on + strandat 51.695 kb on - strandat 51.699 kb on - strandat 51.738 kb on + strandat 51.752 kb on + strandat 51.752 kb on + strandat 51.763 kb on + strandat 51.763 kb on + strandat 51.765 kb on + strandat 51.766 kb on - strandat 51.790 kb on + strandat 51.806 kb on + strandat 51.806 kb on + strandat 51.806 kb on + strandat 51.845 kb on - strandat 51.913 kb on + strandat 51.979 kb on - strandat 52.005 kb on + strandat 52.013 kb on - strandat 52.018 kb on - strandat 52.032 kb on + strandat 52.049 kb on + strandat 52.153 kb on + strandat 52.154 kb on - strandat 52.187 kb on - strandat 52.281 kb on + strand, within ehxCat 52.312 kb on + strand, within ehxCat 52.611 kb on + strand, within ehxCat 52.909 kb on + strandat 52.975 kb on + strandat 52.982 kb on - strandat 53.084 kb on + strand, within ehxAat 53.084 kb on + strand, within ehxAat 53.198 kb on + strand, within ehxAat 53.198 kb on + strand, within ehxAat 53.198 kb on + strand, within ehxAat 53.200 kb on + strand, within ehxAat 53.214 kb on - strand, within ehxAat 53.238 kb on - strand, within ehxAat 53.251 kb on + strand, within ehxAat 53.252 kb on - strand, within ehxAat 53.256 kb on - strand, within ehxAat 53.270 kb on - strand, within ehxAat 53.276 kb on + strand, within ehxAat 53.304 kb on - strand, within ehxAat 53.363 kb on - strand, within ehxAat 53.444 kb on + strand, within ehxAat 53.469 kb on - strand, within ehxAat 53.469 kb on - strand, within ehxAat 53.529 kb on - strand, within ehxAat 53.544 kb on + strand, within ehxAat 53.546 kb on + strand, within ehxAat 53.546 kb on + strand, within ehxAat 53.547 kb on - strand, within ehxAat 53.618 kb on + strand, within ehxAat 53.676 kb on - strand, within ehxAat 53.676 kb on - strand, within ehxA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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51,206 + tnp-IS3 MCAODC_15330 0.30 -1.4
51,206 + tnp-IS3 MCAODC_15330 0.30 -0.5
51,206 + tnp-IS3 MCAODC_15330 0.30 +2.0
51,206 + tnp-IS3 MCAODC_15330 0.30 -2.2
51,206 + tnp-IS3 MCAODC_15330 0.30 +0.8
51,206 + tnp-IS3 MCAODC_15330 0.30 -2.9
51,207 - tnp-IS3 MCAODC_15330 0.30 -0.1
51,207 - tnp-IS3 MCAODC_15330 0.30 -1.4
51,207 - tnp-IS3 MCAODC_15330 0.30 -0.6
51,207 - tnp-IS3 MCAODC_15330 0.30 +1.0
51,207 - tnp-IS3 MCAODC_15330 0.30 +0.6
51,246 + tnp-IS3 MCAODC_15330 0.36 +0.9
51,365 + tnp-IS3 MCAODC_15330 0.55 +0.0
51,367 + tnp-IS3 MCAODC_15330 0.55 -1.5
51,367 + tnp-IS3 MCAODC_15330 0.55 -0.6
51,367 + tnp-IS3 MCAODC_15330 0.55 -1.1
51,367 + tnp-IS3 MCAODC_15330 0.55 -0.7
51,367 + tnp-IS3 MCAODC_15330 0.55 +0.3
51,367 + tnp-IS3 MCAODC_15330 0.55 -2.4
51,367 + tnp-IS3 MCAODC_15330 0.55 +0.6
51,367 + tnp-IS3 MCAODC_15330 0.55 -0.6
51,367 + tnp-IS3 MCAODC_15330 0.55 -0.1
51,367 + tnp-IS3 MCAODC_15330 0.55 -1.1
51,367 + tnp-IS3 MCAODC_15330 0.55 -0.2
51,367 + tnp-IS3 MCAODC_15330 0.55 -0.6
51,368 - tnp-IS3 MCAODC_15330 0.55 +1.0
51,368 - tnp-IS3 MCAODC_15330 0.55 +0.3
51,368 - tnp-IS3 MCAODC_15330 0.55 -0.5
51,368 - tnp-IS3 MCAODC_15330 0.55 +1.3
51,368 - tnp-IS3 MCAODC_15330 0.55 -1.6
51,390 + tnp-IS3 MCAODC_15330 0.58 +1.0
51,390 + tnp-IS3 MCAODC_15330 0.58 -0.6
51,390 + tnp-IS3 MCAODC_15330 0.58 +0.1
51,391 - tnp-IS3 MCAODC_15330 0.59 +3.5
51,391 - tnp-IS3 MCAODC_15330 0.59 +0.2
51,507 - tnp-IS3 MCAODC_15330 0.76 -0.7
51,537 + tnp-IS3 MCAODC_15330 0.81 -0.2
51,537 + tnp-IS3 MCAODC_15330 0.81 +1.1
51,537 + tnp-IS3 MCAODC_15330 0.81 -0.7
51,537 + tnp-IS3 MCAODC_15330 0.81 -0.2
51,545 + tnp-IS3 MCAODC_15330 0.82 +1.0
51,545 + tnp-IS3 MCAODC_15330 0.82 +0.2
51,546 - tnp-IS3 MCAODC_15330 0.82 -0.2
51,546 - tnp-IS3 MCAODC_15330 0.82 -0.6
51,546 - tnp-IS3 MCAODC_15330 0.82 -0.0
51,547 + tnp-IS3 MCAODC_15330 0.82 +0.5
51,547 + tnp-IS3 MCAODC_15330 0.82 +1.0
51,547 + tnp-IS3 MCAODC_15330 0.82 +0.0
51,548 - tnp-IS3 MCAODC_15330 0.83 -1.8
51,548 - tnp-IS3 MCAODC_15330 0.83 -3.3
51,548 - tnp-IS3 MCAODC_15330 0.83 +0.7
51,548 - tnp-IS3 MCAODC_15330 0.83 -1.0
51,557 + tnp-IS3 MCAODC_15330 0.84 -0.9
51,560 + tnp-IS3 MCAODC_15330 0.84 -0.5
51,560 + tnp-IS3 MCAODC_15330 0.84 +0.7
51,560 + tnp-IS3 MCAODC_15330 0.84 +0.3
51,560 + tnp-IS3 MCAODC_15330 0.84 -2.6
51,561 - tnp-IS3 MCAODC_15330 0.85 -1.1
51,584 + tnp-IS3 MCAODC_15330 0.88 +2.0
51,587 - tnp-IS3 MCAODC_15330 0.89 -0.1
51,587 - tnp-IS3 MCAODC_15330 0.89 -0.9
51,666 + +0.3
51,666 + -0.7
51,666 + -0.6
51,667 - -0.4
51,667 - +0.0
51,694 + -0.1
51,694 + -1.1
51,695 - +0.2
51,699 - -0.3
51,738 + -0.7
51,752 + -0.9
51,752 + +0.1
51,763 + -0.7
51,763 + +0.3
51,765 + +1.0
51,766 - +0.2
51,790 + -0.5
51,806 + -1.6
51,806 + -1.7
51,806 + +1.0
51,845 - -1.2
51,913 + +1.1
51,979 - -1.4
52,005 + -0.1
52,013 - +1.2
52,018 - +2.0
52,032 + +0.2
52,049 + +0.2
52,153 + -0.9
52,154 - -1.4
52,187 - +0.4
52,281 + ehxC MCAODC_15335 0.15 +0.3
52,312 + ehxC MCAODC_15335 0.21 +0.3
52,611 + ehxC MCAODC_15335 0.79 +2.7
52,909 + +0.9
52,975 + +1.2
52,982 - +0.2
53,084 + ehxA MCAODC_15340 0.12 -0.8
53,084 + ehxA MCAODC_15340 0.12 +0.1
53,198 + ehxA MCAODC_15340 0.16 -0.4
53,198 + ehxA MCAODC_15340 0.16 -1.4
53,198 + ehxA MCAODC_15340 0.16 +0.3
53,200 + ehxA MCAODC_15340 0.16 -1.9
53,214 - ehxA MCAODC_15340 0.17 -0.7
53,238 - ehxA MCAODC_15340 0.17 +0.3
53,251 + ehxA MCAODC_15340 0.18 -1.5
53,252 - ehxA MCAODC_15340 0.18 +1.7
53,256 - ehxA MCAODC_15340 0.18 -1.2
53,270 - ehxA MCAODC_15340 0.18 -1.8
53,276 + ehxA MCAODC_15340 0.19 +0.0
53,304 - ehxA MCAODC_15340 0.20 +0.0
53,363 - ehxA MCAODC_15340 0.21 +0.5
53,444 + ehxA MCAODC_15340 0.24 +2.3
53,469 - ehxA MCAODC_15340 0.25 +0.1
53,469 - ehxA MCAODC_15340 0.25 -1.7
53,529 - ehxA MCAODC_15340 0.27 -0.7
53,544 + ehxA MCAODC_15340 0.28 -0.7
53,546 + ehxA MCAODC_15340 0.28 -0.4
53,546 + ehxA MCAODC_15340 0.28 +0.4
53,547 - ehxA MCAODC_15340 0.28 -0.4
53,618 + ehxA MCAODC_15340 0.30 +1.3
53,676 - ehxA MCAODC_15340 0.32 +0.1
53,676 - ehxA MCAODC_15340 0.32 -0.2

Or see this region's nucleotide sequence