Strain Fitness in Escherichia coli ECRC101 around MCAODC_14850

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_14835 and MCAODC_14840 are separated by 104 nucleotidesMCAODC_14840 and MCAODC_14845 are separated by 69 nucleotidesMCAODC_14845 and MCAODC_14850 overlap by 4 nucleotidesMCAODC_14850 and MCAODC_14855 overlap by 4 nucleotidesMCAODC_14855 and tnp-IS3 are separated by 39 nucleotides MCAODC_14835: MCAODC_14835 - HTH cro/C1-type domain-containing protein, at 2,913,183 to 2,913,872 _14835 MCAODC_14840: MCAODC_14840 - transcriptional regulator, at 2,913,977 to 2,914,207 _14840 MCAODC_14845: MCAODC_14845 - regulator, at 2,914,277 to 2,914,816 _14845 MCAODC_14850: MCAODC_14850 - Replication protein O, at 2,914,813 to 2,915,832 _14850 MCAODC_14855: MCAODC_14855 - replication protein P, at 2,915,829 to 2,916,098 _14855 MCAODC_14860: tnp-IS3 - IS3 family transposase, at 2,916,138 to 2,917,025 tnp-IS3 Position (kb) 2914 2915 2916Strain fitness (log2 ratio) -2 -1 0 1 2at 2913.884 kb on - strandat 2913.991 kb on + strandat 2914.064 kb on + strand, within MCAODC_14840at 2914.065 kb on - strand, within MCAODC_14840at 2914.065 kb on - strand, within MCAODC_14840at 2914.066 kb on + strand, within MCAODC_14840at 2914.066 kb on + strand, within MCAODC_14840at 2914.066 kb on + strand, within MCAODC_14840at 2914.067 kb on - strand, within MCAODC_14840at 2914.234 kb on - strandat 2914.246 kb on + strandat 2914.246 kb on + strandat 2914.263 kb on + strandat 2914.276 kb on + strandat 2914.276 kb on + strandat 2914.277 kb on - strandat 2914.288 kb on + strandat 2914.288 kb on + strandat 2914.288 kb on + strandat 2914.288 kb on + strandat 2914.288 kb on + strandat 2914.289 kb on - strandat 2914.289 kb on - strandat 2914.292 kb on + strandat 2914.292 kb on + strandat 2914.293 kb on - strandat 2914.293 kb on - strandat 2914.293 kb on - strandat 2914.329 kb on + strandat 2914.591 kb on - strand, within MCAODC_14845at 2914.735 kb on + strand, within MCAODC_14845at 2914.735 kb on + strand, within MCAODC_14845at 2914.735 kb on + strand, within MCAODC_14845at 2914.736 kb on - strand, within MCAODC_14845at 2914.812 kb on + strandat 2914.813 kb on - strandat 2914.813 kb on - strandat 2914.987 kb on + strand, within MCAODC_14850at 2914.989 kb on + strand, within MCAODC_14850at 2915.184 kb on - strand, within MCAODC_14850at 2915.395 kb on - strand, within MCAODC_14850at 2915.397 kb on - strand, within MCAODC_14850

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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2,913,884 - -0.2
2,913,991 + +0.6
2,914,064 + MCAODC_14840 0.38 -0.0
2,914,065 - MCAODC_14840 0.38 -0.1
2,914,065 - MCAODC_14840 0.38 -0.4
2,914,066 + MCAODC_14840 0.39 +0.2
2,914,066 + MCAODC_14840 0.39 -0.8
2,914,066 + MCAODC_14840 0.39 -0.1
2,914,067 - MCAODC_14840 0.39 +0.1
2,914,234 - -0.6
2,914,246 + -0.6
2,914,246 + +2.4
2,914,263 + -0.0
2,914,276 + +1.2
2,914,276 + -0.5
2,914,277 - -2.1
2,914,288 + +0.6
2,914,288 + +0.9
2,914,288 + -0.2
2,914,288 + +0.2
2,914,288 + +0.3
2,914,289 - +1.0
2,914,289 - -0.6
2,914,292 + -0.1
2,914,292 + -1.2
2,914,293 - -1.1
2,914,293 - +0.1
2,914,293 - -0.7
2,914,329 + +0.3
2,914,591 - MCAODC_14845 0.58 -1.2
2,914,735 + MCAODC_14845 0.85 +0.4
2,914,735 + MCAODC_14845 0.85 -0.7
2,914,735 + MCAODC_14845 0.85 -0.2
2,914,736 - MCAODC_14845 0.85 -0.9
2,914,812 + -0.1
2,914,813 - -1.4
2,914,813 - +0.5
2,914,987 + MCAODC_14850 0.17 +0.8
2,914,989 + MCAODC_14850 0.17 -1.8
2,915,184 - MCAODC_14850 0.36 +1.3
2,915,395 - MCAODC_14850 0.57 +0.8
2,915,397 - MCAODC_14850 0.57 +0.7

Or see this region's nucleotide sequence