Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_14835 and MCAODC_14840 are separated by 104 nucleotides MCAODC_14840 and MCAODC_14845 are separated by 69 nucleotides MCAODC_14845 and MCAODC_14850 overlap by 4 nucleotides MCAODC_14850 and MCAODC_14855 overlap by 4 nucleotides MCAODC_14855 and tnp-IS3 are separated by 39 nucleotides
MCAODC_14835: MCAODC_14835 - HTH cro/C1-type domain-containing protein, at 2,913,183 to 2,913,872
_14835
MCAODC_14840: MCAODC_14840 - transcriptional regulator, at 2,913,977 to 2,914,207
_14840
MCAODC_14845: MCAODC_14845 - regulator, at 2,914,277 to 2,914,816
_14845
MCAODC_14850: MCAODC_14850 - Replication protein O, at 2,914,813 to 2,915,832
_14850
MCAODC_14855: MCAODC_14855 - replication protein P, at 2,915,829 to 2,916,098
_14855
MCAODC_14860: tnp-IS3 - IS3 family transposase, at 2,916,138 to 2,917,025
tnp-IS3
Position (kb)
2914
2915
2916 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2913.884 kb on - strand at 2913.991 kb on + strand at 2914.064 kb on + strand, within MCAODC_14840 at 2914.065 kb on - strand, within MCAODC_14840 at 2914.065 kb on - strand, within MCAODC_14840 at 2914.066 kb on + strand, within MCAODC_14840 at 2914.066 kb on + strand, within MCAODC_14840 at 2914.066 kb on + strand, within MCAODC_14840 at 2914.067 kb on - strand, within MCAODC_14840 at 2914.234 kb on - strand at 2914.246 kb on + strand at 2914.246 kb on + strand at 2914.263 kb on + strand at 2914.276 kb on + strand at 2914.276 kb on + strand at 2914.277 kb on - strand at 2914.288 kb on + strand at 2914.288 kb on + strand at 2914.288 kb on + strand at 2914.288 kb on + strand at 2914.288 kb on + strand at 2914.289 kb on - strand at 2914.289 kb on - strand at 2914.292 kb on + strand at 2914.292 kb on + strand at 2914.293 kb on - strand at 2914.293 kb on - strand at 2914.293 kb on - strand at 2914.329 kb on + strand at 2914.591 kb on - strand, within MCAODC_14845 at 2914.735 kb on + strand, within MCAODC_14845 at 2914.735 kb on + strand, within MCAODC_14845 at 2914.735 kb on + strand, within MCAODC_14845 at 2914.736 kb on - strand, within MCAODC_14845 at 2914.812 kb on + strand at 2914.813 kb on - strand at 2914.813 kb on - strand at 2914.987 kb on + strand, within MCAODC_14850 at 2914.989 kb on + strand, within MCAODC_14850 at 2915.184 kb on - strand, within MCAODC_14850 at 2915.395 kb on - strand, within MCAODC_14850 at 2915.397 kb on - strand, within MCAODC_14850
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 2,913,884 - -0.2 2,913,991 + +0.6 2,914,064 + MCAODC_14840 0.38 -0.0 2,914,065 - MCAODC_14840 0.38 -0.1 2,914,065 - MCAODC_14840 0.38 -0.4 2,914,066 + MCAODC_14840 0.39 +0.2 2,914,066 + MCAODC_14840 0.39 -0.8 2,914,066 + MCAODC_14840 0.39 -0.1 2,914,067 - MCAODC_14840 0.39 +0.1 2,914,234 - -0.6 2,914,246 + -0.6 2,914,246 + +2.4 2,914,263 + -0.0 2,914,276 + +1.2 2,914,276 + -0.5 2,914,277 - -2.1 2,914,288 + +0.6 2,914,288 + +0.9 2,914,288 + -0.2 2,914,288 + +0.2 2,914,288 + +0.3 2,914,289 - +1.0 2,914,289 - -0.6 2,914,292 + -0.1 2,914,292 + -1.2 2,914,293 - -1.1 2,914,293 - +0.1 2,914,293 - -0.7 2,914,329 + +0.3 2,914,591 - MCAODC_14845 0.58 -1.2 2,914,735 + MCAODC_14845 0.85 +0.4 2,914,735 + MCAODC_14845 0.85 -0.7 2,914,735 + MCAODC_14845 0.85 -0.2 2,914,736 - MCAODC_14845 0.85 -0.9 2,914,812 + -0.1 2,914,813 - -1.4 2,914,813 - +0.5 2,914,987 + MCAODC_14850 0.17 +0.8 2,914,989 + MCAODC_14850 0.17 -1.8 2,915,184 - MCAODC_14850 0.36 +1.3 2,915,395 - MCAODC_14850 0.57 +0.8 2,915,397 - MCAODC_14850 0.57 +0.7
Or see this region's nucleotide sequence