Strain Fitness in Escherichia coli ECRC101 around MCAODC_11640

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespM2 and MCAODC_11640 are separated by 501 nucleotidesMCAODC_11640 and smpB are separated by 845 nucleotides MCAODC_11635: espM2 - T3SS effector guanine nucleotide exchange factor EspM2, at 2,307,401 to 2,307,985 espM2 MCAODC_11640: MCAODC_11640 - DinI-like protein Z3916/ECs3483, at 2,308,487 to 2,308,735 _11640 MCAODC_11650: smpB - SsrA-binding protein SmpB, at 2,309,581 to 2,310,063 smpB Position (kb) 2308 2309Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2307.593 kb on - strand, within espM2at 2307.741 kb on + strand, within espM2at 2307.960 kb on - strandat 2308.086 kb on - strandat 2308.108 kb on + strandat 2308.133 kb on - strandat 2308.137 kb on + strandat 2308.139 kb on + strandat 2308.164 kb on + strandat 2308.169 kb on - strandat 2308.174 kb on - strandat 2308.196 kb on - strandat 2308.320 kb on + strandat 2308.320 kb on + strandat 2308.369 kb on + strandat 2308.370 kb on - strandat 2308.400 kb on + strandat 2308.401 kb on - strandat 2308.401 kb on - strandat 2308.401 kb on - strandat 2308.484 kb on + strandat 2308.485 kb on - strandat 2308.696 kb on + strand, within MCAODC_11640at 2308.715 kb on + strandat 2308.735 kb on + strandat 2308.735 kb on + strandat 2308.736 kb on - strandat 2308.834 kb on - strandat 2308.840 kb on - strandat 2308.871 kb on - strandat 2308.871 kb on - strandat 2308.910 kb on - strandat 2308.967 kb on - strandat 2308.989 kb on + strandat 2308.990 kb on - strandat 2309.000 kb on - strandat 2309.056 kb on - strandat 2309.059 kb on - strandat 2309.059 kb on - strandat 2309.059 kb on - strandat 2309.067 kb on - strandat 2309.113 kb on - strandat 2309.121 kb on - strandat 2309.121 kb on - strandat 2309.244 kb on - strandat 2309.247 kb on - strandat 2309.247 kb on - strandat 2309.247 kb on - strandat 2309.255 kb on - strandat 2309.439 kb on - strandat 2309.512 kb on + strandat 2309.512 kb on + strandat 2309.513 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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2,307,593 - espM2 MCAODC_11635 0.33 +0.5
2,307,741 + espM2 MCAODC_11635 0.58 +0.2
2,307,960 - -0.6
2,308,086 - -0.3
2,308,108 + -0.5
2,308,133 - -1.8
2,308,137 + -1.1
2,308,139 + -0.5
2,308,164 + -0.1
2,308,169 - -1.0
2,308,174 - +1.9
2,308,196 - -3.2
2,308,320 + +0.5
2,308,320 + +0.4
2,308,369 + +1.8
2,308,370 - -0.6
2,308,400 + +0.2
2,308,401 - +0.3
2,308,401 - +0.4
2,308,401 - -0.7
2,308,484 + -1.0
2,308,485 - -1.1
2,308,696 + MCAODC_11640 0.84 +0.7
2,308,715 + +0.3
2,308,735 + +0.5
2,308,735 + +0.1
2,308,736 - +0.4
2,308,834 - -1.6
2,308,840 - +0.1
2,308,871 - -0.3
2,308,871 - +0.3
2,308,910 - -0.5
2,308,967 - -0.7
2,308,989 + +0.3
2,308,990 - -2.6
2,309,000 - -0.3
2,309,056 - +1.0
2,309,059 - -1.2
2,309,059 - +0.4
2,309,059 - -1.4
2,309,067 - -3.5
2,309,113 - +0.7
2,309,121 - +0.1
2,309,121 - +0.1
2,309,244 - -0.5
2,309,247 - +1.1
2,309,247 - -0.9
2,309,247 - -0.3
2,309,255 - -1.1
2,309,439 - -0.7
2,309,512 + -0.8
2,309,512 + -0.1
2,309,513 - -0.1

Or see this region's nucleotide sequence