Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt espM2 and MCAODC_11640 are separated by 501 nucleotides MCAODC_11640 and smpB are separated by 845 nucleotides
MCAODC_11635: espM2 - T3SS effector guanine nucleotide exchange factor EspM2, at 2,307,401 to 2,307,985
espM2
MCAODC_11640: MCAODC_11640 - DinI-like protein Z3916/ECs3483, at 2,308,487 to 2,308,735
_11640
MCAODC_11650: smpB - SsrA-binding protein SmpB, at 2,309,581 to 2,310,063
smpB
Position (kb)
2308
2309 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2307.593 kb on - strand, within espM2 at 2307.741 kb on + strand, within espM2 at 2307.960 kb on - strand at 2308.086 kb on - strand at 2308.108 kb on + strand at 2308.133 kb on - strand at 2308.137 kb on + strand at 2308.139 kb on + strand at 2308.164 kb on + strand at 2308.169 kb on - strand at 2308.174 kb on - strand at 2308.196 kb on - strand at 2308.320 kb on + strand at 2308.320 kb on + strand at 2308.369 kb on + strand at 2308.370 kb on - strand at 2308.400 kb on + strand at 2308.401 kb on - strand at 2308.401 kb on - strand at 2308.401 kb on - strand at 2308.484 kb on + strand at 2308.485 kb on - strand at 2308.696 kb on + strand, within MCAODC_11640 at 2308.715 kb on + strand at 2308.735 kb on + strand at 2308.735 kb on + strand at 2308.736 kb on - strand at 2308.834 kb on - strand at 2308.840 kb on - strand at 2308.871 kb on - strand at 2308.871 kb on - strand at 2308.910 kb on - strand at 2308.967 kb on - strand at 2308.989 kb on + strand at 2308.990 kb on - strand at 2309.000 kb on - strand at 2309.056 kb on - strand at 2309.059 kb on - strand at 2309.059 kb on - strand at 2309.059 kb on - strand at 2309.067 kb on - strand at 2309.113 kb on - strand at 2309.121 kb on - strand at 2309.121 kb on - strand at 2309.244 kb on - strand at 2309.247 kb on - strand at 2309.247 kb on - strand at 2309.247 kb on - strand at 2309.255 kb on - strand at 2309.439 kb on - strand at 2309.512 kb on + strand at 2309.512 kb on + strand at 2309.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 2,307,593 - espM2 MCAODC_11635 0.33 +0.5 2,307,741 + espM2 MCAODC_11635 0.58 +0.2 2,307,960 - -0.6 2,308,086 - -0.3 2,308,108 + -0.5 2,308,133 - -1.8 2,308,137 + -1.1 2,308,139 + -0.5 2,308,164 + -0.1 2,308,169 - -1.0 2,308,174 - +1.9 2,308,196 - -3.2 2,308,320 + +0.5 2,308,320 + +0.4 2,308,369 + +1.8 2,308,370 - -0.6 2,308,400 + +0.2 2,308,401 - +0.3 2,308,401 - +0.4 2,308,401 - -0.7 2,308,484 + -1.0 2,308,485 - -1.1 2,308,696 + MCAODC_11640 0.84 +0.7 2,308,715 + +0.3 2,308,735 + +0.5 2,308,735 + +0.1 2,308,736 - +0.4 2,308,834 - -1.6 2,308,840 - +0.1 2,308,871 - -0.3 2,308,871 - +0.3 2,308,910 - -0.5 2,308,967 - -0.7 2,308,989 + +0.3 2,308,990 - -2.6 2,309,000 - -0.3 2,309,056 - +1.0 2,309,059 - -1.2 2,309,059 - +0.4 2,309,059 - -1.4 2,309,067 - -3.5 2,309,113 - +0.7 2,309,121 - +0.1 2,309,121 - +0.1 2,309,244 - -0.5 2,309,247 - +1.1 2,309,247 - -0.9 2,309,247 - -0.3 2,309,255 - -1.1 2,309,439 - -0.7 2,309,512 + -0.8 2,309,512 + -0.1 2,309,513 - -0.1
Or see this region's nucleotide sequence