Strain Fitness in Escherichia coli ECRC101 around MCAODC_11420

Experiment: Control_ECRC101

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Control_ECRC101
2,265,489	-	ygaV	MCAODC_11405	0.76	+1.2
2,265,541	-				+0.6
2,265,541	-				+1.0
2,265,561	-				-1.1
2,265,613	+				+0.3
2,265,613	+				-0.3
2,265,613	+				-0.3
2,265,613	+				+1.7
2,265,632	+				-0.9
2,265,651	-				+0.5
2,265,680	+				+0.7
2,265,720	+				+0.4
2,265,731	+				+0.5
2,265,732	-				-1.0
2,265,738	+				-0.3
2,265,739	-				+0.7
2,265,742	+				-1.5
2,265,742	+				+0.9
2,265,743	-				-0.6
2,265,826	+	yqaE	MCAODC_11410	0.52	-2.9
2,265,832	+	yqaE	MCAODC_11410	0.56	+0.0
2,265,832	+	yqaE	MCAODC_11410	0.56	-0.1
2,265,832	+	yqaE	MCAODC_11410	0.56	-0.0
2,265,833	-	yqaE	MCAODC_11410	0.57	+2.5
2,265,854	+	yqaE	MCAODC_11410	0.70	-1.1
2,265,854	+	yqaE	MCAODC_11410	0.70	+0.9
2,265,854	+	yqaE	MCAODC_11410	0.70	-0.2
2,265,854	+	yqaE	MCAODC_11410	0.70	-0.4
2,265,855	-	yqaE	MCAODC_11410	0.70	+0.0
2,265,856	+	yqaE	MCAODC_11410	0.71	-1.0
2,265,857	-	yqaE	MCAODC_11410	0.72	-2.0
2,265,900	-				+0.8
2,265,944	-				+0.4
2,265,944	-				+0.3
2,265,946	+				-2.2
2,265,947	-				-2.0
2,265,947	-				+0.3
2,265,980	+				+0.2
2,265,980	+				+0.2
2,265,981	-				-1.4
2,265,984	+				-0.0
2,265,985	-				-0.7
2,266,104	-	kbp	MCAODC_11415	0.26	-1.2
2,266,212	+	kbp	MCAODC_11415	0.50	-0.0
2,266,282	-	kbp	MCAODC_11415	0.66	+0.4
2,266,327	+	kbp	MCAODC_11415	0.76	+1.5
2,266,328	-	kbp	MCAODC_11415	0.76	-0.9
2,266,345	+	kbp	MCAODC_11415	0.80	+1.1
2,266,351	-	kbp	MCAODC_11415	0.81	-0.5
2,266,351	-	kbp	MCAODC_11415	0.81	+0.2
2,266,432	+				+0.1
2,266,433	-				-0.4
2,266,433	-				-0.0
2,266,436	+				+1.3
2,266,436	+				-0.4
2,266,437	-				+0.1
2,266,480	+				-0.8
2,266,480	+				+1.2
2,266,481	-				+1.7
2,266,481	-				+0.7
2,266,661	+	csiR	MCAODC_11420	0.34	+0.9
2,266,693	-	csiR	MCAODC_11420	0.39	+2.0
2,266,835	-	csiR	MCAODC_11420	0.60	-0.5
2,266,835	-	csiR	MCAODC_11420	0.60	-2.0
2,266,894	-	csiR	MCAODC_11420	0.69	+1.1
2,266,894	-	csiR	MCAODC_11420	0.69	+1.1
2,267,049	+				+0.1
2,267,088	+				-0.6
2,267,088	+				+0.3
2,267,089	-				+0.9
2,267,089	-				-0.6
2,267,089	-				+1.6
2,267,089	-				-0.0
2,267,129	+				-0.3
2,267,130	-				-0.8
2,267,189	+				-0.1
2,267,195	+				-0.7
2,267,211	+				+1.4
2,267,232	+				+0.2
2,267,232	+				-0.3
2,267,233	-				-2.1
2,267,233	-				+0.2
2,267,254	-				+0.1
2,267,276	+	gabP	MCAODC_11425	0.11	+1.0
2,267,277	-	gabP	MCAODC_11425	0.11	+0.1
2,267,277	-	gabP	MCAODC_11425	0.11	+0.4
2,267,279	+	gabP	MCAODC_11425	0.11	+0.5
2,267,280	-	gabP	MCAODC_11425	0.12	+0.2
2,267,280	-	gabP	MCAODC_11425	0.12	-0.2
2,267,312	-	gabP	MCAODC_11425	0.14	+1.5
2,267,391	+	gabP	MCAODC_11425	0.19	+0.7
2,267,392	-	gabP	MCAODC_11425	0.20	+1.2
2,267,392	-	gabP	MCAODC_11425	0.20	-0.3
2,267,395	+	gabP	MCAODC_11425	0.20	-0.1
2,267,458	+	gabP	MCAODC_11425	0.24	+1.1
2,267,458	+	gabP	MCAODC_11425	0.24	-2.4
2,267,461	+	gabP	MCAODC_11425	0.24	-1.1
2,267,462	-	gabP	MCAODC_11425	0.25	-0.5
2,267,502	+	gabP	MCAODC_11425	0.27	+0.4
2,267,502	+	gabP	MCAODC_11425	0.27	-4.1
2,267,503	-	gabP	MCAODC_11425	0.27	+0.6
2,267,503	-	gabP	MCAODC_11425	0.27	+0.2
2,267,515	+	gabP	MCAODC_11425	0.28	+1.8
2,267,516	-	gabP	MCAODC_11425	0.28	-0.4
2,267,516	-	gabP	MCAODC_11425	0.28	-2.1
2,267,516	-	gabP	MCAODC_11425	0.28	+0.5
2,267,526	-	gabP	MCAODC_11425	0.29	-0.1
2,267,582	-	gabP	MCAODC_11425	0.33	-0.8
2,267,602	+	gabP	MCAODC_11425	0.35	+0.3
2,267,602	+	gabP	MCAODC_11425	0.35	-0.9
2,267,637	+	gabP	MCAODC_11425	0.37	+0.0
2,267,638	-	gabP	MCAODC_11425	0.37	+1.3
2,267,638	-	gabP	MCAODC_11425	0.37	+0.8
2,267,640	+	gabP	MCAODC_11425	0.37	+0.0
2,267,641	-	gabP	MCAODC_11425	0.37	-2.5
2,267,641	-	gabP	MCAODC_11425	0.37	+0.0
2,267,659	-	gabP	MCAODC_11425	0.39	-1.2
2,267,673	+	gabP	MCAODC_11425	0.40	+0.7
2,267,674	-	gabP	MCAODC_11425	0.40	+1.0
2,267,676	-	gabP	MCAODC_11425	0.40	+0.7
2,267,676	-	gabP	MCAODC_11425	0.40	-2.0
2,267,676	-	gabP	MCAODC_11425	0.40	-0.2
2,267,701	+	gabP	MCAODC_11425	0.42	-1.7
2,267,739	+	gabP	MCAODC_11425	0.44	-0.4
2,267,751	+	gabP	MCAODC_11425	0.45	-1.0
2,267,751	+	gabP	MCAODC_11425	0.45	-0.1
2,267,752	-	gabP	MCAODC_11425	0.45	+2.3
2,267,752	-	gabP	MCAODC_11425	0.45	+0.3
2,267,752	-	gabP	MCAODC_11425	0.45	+0.5
2,267,763	-	gabP	MCAODC_11425	0.46	+1.2
2,267,773	+	gabP	MCAODC_11425	0.47	+0.4
2,267,781	-	gabP	MCAODC_11425	0.47	+1.9
2,267,782	+	gabP	MCAODC_11425	0.47	-1.3
2,267,786	+	gabP	MCAODC_11425	0.48	-0.4
2,267,819	+	gabP	MCAODC_11425	0.50	-0.5
2,267,820	-	gabP	MCAODC_11425	0.50	-0.9
2,267,934	-	gabP	MCAODC_11425	0.58	-0.2
2,268,076	+	gabP	MCAODC_11425	0.68	+0.6
2,268,091	-	gabP	MCAODC_11425	0.69	+0.1
2,268,091	-	gabP	MCAODC_11425	0.69	+0.0
2,268,094	-	gabP	MCAODC_11425	0.70	-0.1