Strain Fitness in Escherichia coli ECRC101 around MCAODC_09620

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and MCAODC_09620 are separated by 39 nucleotidesMCAODC_09620 and MCAODC_09625 are separated by 5 nucleotides MCAODC_09610: tnp-IS3 - IS3 family transposase, at 1,914,210 to 1,914,536 tnp-IS3 MCAODC_09615: tnp-IS3 - IS3 family transposase, at 1,914,536 to 1,915,423 tnp-IS3 MCAODC_09620: MCAODC_09620 - adherence protein, at 1,915,463 to 1,916,290 _09620 MCAODC_09625: MCAODC_09625 - adherence protein, at 1,916,296 to 1,917,597 _09625 Position (kb) 1915 1916 1917Strain fitness (log2 ratio) -1 0 1at 1915.517 kb on + strandat 1915.799 kb on - strand, within MCAODC_09620at 1915.921 kb on + strand, within MCAODC_09620at 1916.430 kb on - strand, within MCAODC_09625at 1916.835 kb on - strand, within MCAODC_09625at 1916.876 kb on + strand, within MCAODC_09625at 1916.886 kb on + strand, within MCAODC_09625

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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1,915,517 + -0.1
1,915,799 - MCAODC_09620 0.41 +0.7
1,915,921 + MCAODC_09620 0.55 +0.6
1,916,430 - MCAODC_09625 0.10 +0.8
1,916,835 - MCAODC_09625 0.41 -0.8
1,916,876 + MCAODC_09625 0.45 +0.8
1,916,886 + MCAODC_09625 0.45 -0.8

Or see this region's nucleotide sequence