Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysC and yjbD are separated by 252 nucleotides yjbD and rluF are separated by 0 nucleotides
MCAODC_03680: lysC - lysine-sensitive aspartokinase 3, at 738,418 to 739,767
lysC
MCAODC_03685: yjbD - Uncharacterized protein YjbD, at 740,020 to 740,292
yjbD
MCAODC_03690: rluF - 23S rRNA pseudouridine(2604) synthase RluF, at 740,293 to 741,165
rluF
Position (kb) 740
741 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 739.025 kb on - strand, within lysC at 739.026 kb on + strand, within lysC at 739.026 kb on + strand, within lysC at 739.027 kb on - strand, within lysC at 739.072 kb on - strand, within lysC at 739.072 kb on - strand, within lysC at 739.096 kb on + strand, within lysC at 739.096 kb on + strand, within lysC at 739.096 kb on + strand, within lysC at 739.096 kb on + strand, within lysC at 739.096 kb on + strand, within lysC at 739.096 kb on + strand, within lysC at 739.097 kb on - strand, within lysC at 739.097 kb on - strand, within lysC at 739.116 kb on - strand, within lysC at 739.275 kb on + strand, within lysC at 739.276 kb on - strand, within lysC at 739.276 kb on - strand, within lysC at 739.276 kb on - strand, within lysC at 739.276 kb on - strand, within lysC at 739.291 kb on - strand, within lysC at 739.291 kb on - strand, within lysC at 739.291 kb on - strand, within lysC at 739.291 kb on - strand, within lysC at 739.369 kb on - strand, within lysC at 739.422 kb on + strand, within lysC at 739.425 kb on + strand, within lysC at 739.425 kb on + strand, within lysC at 739.439 kb on + strand, within lysC at 739.440 kb on - strand, within lysC at 739.469 kb on + strand, within lysC at 739.479 kb on + strand, within lysC at 739.479 kb on + strand, within lysC at 739.479 kb on + strand, within lysC at 739.479 kb on + strand, within lysC at 739.506 kb on + strand, within lysC at 739.693 kb on - strand at 739.749 kb on + strand at 739.752 kb on + strand at 739.766 kb on - strand at 739.766 kb on - strand at 739.769 kb on + strand at 739.769 kb on + strand at 739.769 kb on + strand at 739.769 kb on + strand at 739.770 kb on - strand at 739.774 kb on + strand at 739.775 kb on - strand at 739.775 kb on - strand at 739.789 kb on - strand at 739.790 kb on + strand at 739.821 kb on - strand at 739.821 kb on - strand at 739.832 kb on + strand at 739.844 kb on + strand at 739.844 kb on + strand at 739.844 kb on + strand at 739.845 kb on - strand at 739.875 kb on + strand at 739.876 kb on - strand at 739.906 kb on + strand at 739.907 kb on - strand at 739.911 kb on - strand at 739.911 kb on - strand at 739.914 kb on + strand at 739.927 kb on - strand at 739.927 kb on - strand at 739.930 kb on + strand at 739.930 kb on + strand at 739.931 kb on - strand at 739.931 kb on - strand at 739.934 kb on + strand at 739.953 kb on + strand at 740.035 kb on - strand at 740.155 kb on + strand, within yjbD at 740.156 kb on - strand, within yjbD at 740.164 kb on - strand, within yjbD at 740.227 kb on + strand, within yjbD at 740.227 kb on + strand, within yjbD at 740.228 kb on - strand, within yjbD at 740.230 kb on - strand, within yjbD at 740.230 kb on - strand, within yjbD at 740.253 kb on + strand, within yjbD at 740.253 kb on + strand, within yjbD at 740.253 kb on + strand, within yjbD at 740.382 kb on + strand, within rluF at 740.430 kb on + strand, within rluF at 740.528 kb on - strand, within rluF at 740.541 kb on + strand, within rluF at 740.550 kb on + strand, within rluF at 740.550 kb on + strand, within rluF at 740.628 kb on + strand, within rluF at 740.629 kb on - strand, within rluF at 740.673 kb on + strand, within rluF at 740.718 kb on + strand, within rluF at 740.739 kb on + strand, within rluF at 740.756 kb on + strand, within rluF at 740.756 kb on + strand, within rluF at 740.756 kb on + strand, within rluF at 740.756 kb on + strand, within rluF at 740.757 kb on - strand, within rluF at 740.793 kb on + strand, within rluF at 740.793 kb on + strand, within rluF at 740.794 kb on - strand, within rluF at 740.939 kb on - strand, within rluF at 740.939 kb on - strand, within rluF at 740.958 kb on + strand, within rluF at 740.958 kb on + strand, within rluF at 740.959 kb on - strand, within rluF at 740.962 kb on + strand, within rluF at 740.963 kb on - strand, within rluF at 741.004 kb on + strand, within rluF at 741.061 kb on - strand, within rluF at 741.087 kb on - strand at 741.087 kb on - strand at 741.087 kb on - strand at 741.131 kb on + strand at 741.131 kb on + strand at 741.136 kb on - strand at 741.139 kb on + strand at 741.165 kb on + strand at 741.166 kb on - strand at 741.166 kb on - strand at 741.189 kb on + strand at 741.191 kb on + strand at 741.242 kb on - strand at 741.265 kb on - strand at 741.287 kb on + strand at 741.288 kb on - strand at 741.288 kb on - strand at 741.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 739,025 - lysC MCAODC_03680 0.45 -2.6 739,026 + lysC MCAODC_03680 0.45 +0.7 739,026 + lysC MCAODC_03680 0.45 -0.2 739,027 - lysC MCAODC_03680 0.45 +0.1 739,072 - lysC MCAODC_03680 0.48 -0.5 739,072 - lysC MCAODC_03680 0.48 -0.3 739,096 + lysC MCAODC_03680 0.50 -0.3 739,096 + lysC MCAODC_03680 0.50 -0.2 739,096 + lysC MCAODC_03680 0.50 -2.0 739,096 + lysC MCAODC_03680 0.50 -0.7 739,096 + lysC MCAODC_03680 0.50 -2.4 739,096 + lysC MCAODC_03680 0.50 -0.4 739,097 - lysC MCAODC_03680 0.50 -0.5 739,097 - lysC MCAODC_03680 0.50 -1.2 739,116 - lysC MCAODC_03680 0.52 -2.1 739,275 + lysC MCAODC_03680 0.63 +0.4 739,276 - lysC MCAODC_03680 0.64 +0.2 739,276 - lysC MCAODC_03680 0.64 -1.3 739,276 - lysC MCAODC_03680 0.64 -0.9 739,276 - lysC MCAODC_03680 0.64 +1.8 739,291 - lysC MCAODC_03680 0.65 +0.4 739,291 - lysC MCAODC_03680 0.65 +1.3 739,291 - lysC MCAODC_03680 0.65 -0.1 739,291 - lysC MCAODC_03680 0.65 -0.4 739,369 - lysC MCAODC_03680 0.70 -0.9 739,422 + lysC MCAODC_03680 0.74 -0.0 739,425 + lysC MCAODC_03680 0.75 -1.2 739,425 + lysC MCAODC_03680 0.75 +0.3 739,439 + lysC MCAODC_03680 0.76 -1.9 739,440 - lysC MCAODC_03680 0.76 -2.0 739,469 + lysC MCAODC_03680 0.78 -0.8 739,479 + lysC MCAODC_03680 0.79 -0.6 739,479 + lysC MCAODC_03680 0.79 -2.6 739,479 + lysC MCAODC_03680 0.79 -1.6 739,479 + lysC MCAODC_03680 0.79 -1.8 739,506 + lysC MCAODC_03680 0.81 +0.7 739,693 - -0.7 739,749 + -0.4 739,752 + -1.1 739,766 - -0.4 739,766 - +0.8 739,769 + +0.3 739,769 + -0.7 739,769 + +0.4 739,769 + +0.8 739,770 - -0.4 739,774 + -1.4 739,775 - -0.7 739,775 - -1.5 739,789 - -0.5 739,790 + +0.1 739,821 - -0.8 739,821 - +0.2 739,832 + -0.3 739,844 + -0.1 739,844 + +0.8 739,844 + -0.5 739,845 - -0.1 739,875 + -0.7 739,876 - -1.7 739,906 + -0.2 739,907 - -0.5 739,911 - +1.2 739,911 - +0.8 739,914 + -0.8 739,927 - -0.5 739,927 - +0.2 739,930 + -0.7 739,930 + -1.9 739,931 - -0.3 739,931 - -1.2 739,934 + -0.2 739,953 + -0.0 740,035 - +0.2 740,155 + yjbD MCAODC_03685 0.49 -1.1 740,156 - yjbD MCAODC_03685 0.50 +1.4 740,164 - yjbD MCAODC_03685 0.53 +0.6 740,227 + yjbD MCAODC_03685 0.76 +2.6 740,227 + yjbD MCAODC_03685 0.76 +0.1 740,228 - yjbD MCAODC_03685 0.76 -0.9 740,230 - yjbD MCAODC_03685 0.77 +0.2 740,230 - yjbD MCAODC_03685 0.77 +0.4 740,253 + yjbD MCAODC_03685 0.85 +0.5 740,253 + yjbD MCAODC_03685 0.85 +0.1 740,253 + yjbD MCAODC_03685 0.85 +1.0 740,382 + rluF MCAODC_03690 0.10 +0.4 740,430 + rluF MCAODC_03690 0.16 +0.0 740,528 - rluF MCAODC_03690 0.27 -0.4 740,541 + rluF MCAODC_03690 0.28 -0.6 740,550 + rluF MCAODC_03690 0.29 +0.4 740,550 + rluF MCAODC_03690 0.29 +0.0 740,628 + rluF MCAODC_03690 0.38 +1.8 740,629 - rluF MCAODC_03690 0.38 +0.2 740,673 + rluF MCAODC_03690 0.44 +0.2 740,718 + rluF MCAODC_03690 0.49 -0.7 740,739 + rluF MCAODC_03690 0.51 -0.9 740,756 + rluF MCAODC_03690 0.53 -0.2 740,756 + rluF MCAODC_03690 0.53 -1.3 740,756 + rluF MCAODC_03690 0.53 +1.4 740,756 + rluF MCAODC_03690 0.53 +0.9 740,757 - rluF MCAODC_03690 0.53 -0.0 740,793 + rluF MCAODC_03690 0.57 +0.4 740,793 + rluF MCAODC_03690 0.57 -0.5 740,794 - rluF MCAODC_03690 0.57 -0.2 740,939 - rluF MCAODC_03690 0.74 -0.7 740,939 - rluF MCAODC_03690 0.74 +1.6 740,958 + rluF MCAODC_03690 0.76 -0.1 740,958 + rluF MCAODC_03690 0.76 -0.2 740,959 - rluF MCAODC_03690 0.76 -0.2 740,962 + rluF MCAODC_03690 0.77 -0.0 740,963 - rluF MCAODC_03690 0.77 -4.5 741,004 + rluF MCAODC_03690 0.81 -0.7 741,061 - rluF MCAODC_03690 0.88 +0.4 741,087 - +1.0 741,087 - -0.3 741,087 - -0.0 741,131 + -1.9 741,131 + +0.7 741,136 - -1.2 741,139 + -1.4 741,165 + -0.4 741,166 - -0.0 741,166 - -1.5 741,189 + +0.5 741,191 + -2.1 741,242 - +0.3 741,265 - -1.8 741,287 + -0.3 741,288 - +0.1 741,288 - +0.8 741,288 - -0.2
Or see this region's nucleotide sequence