Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt malK and MCAODC_03610 are separated by 176 nucleotides MCAODC_03610 and malE are separated by 92 nucleotides
MCAODC_03605: malK - maltose/maltodextrin ABC transporter ATP-binding protein MalK, at 723,738 to 724,853
malK
MCAODC_03610: MCAODC_03610 - sugar ABC transporter, at 725,030 to 725,125
_03610
MCAODC_03615: malE - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 725,218 to 726,408
malE
Position (kb) 725
726 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 724.155 kb on - strand, within malK at 724.189 kb on + strand, within malK at 724.189 kb on + strand, within malK at 724.189 kb on + strand, within malK at 724.190 kb on - strand, within malK at 724.190 kb on - strand, within malK at 724.190 kb on - strand, within malK at 724.288 kb on + strand, within malK at 724.289 kb on - strand, within malK at 724.289 kb on - strand, within malK at 724.334 kb on + strand, within malK at 724.492 kb on - strand, within malK at 724.524 kb on - strand, within malK at 724.579 kb on - strand, within malK at 724.579 kb on - strand, within malK at 724.603 kb on + strand, within malK at 724.604 kb on - strand, within malK at 724.719 kb on + strand, within malK at 724.719 kb on + strand, within malK at 724.720 kb on - strand, within malK at 724.720 kb on - strand, within malK at 724.790 kb on + strand at 724.842 kb on + strand at 724.842 kb on + strand at 724.842 kb on + strand at 724.842 kb on + strand at 724.843 kb on - strand at 724.843 kb on - strand at 724.843 kb on - strand at 724.870 kb on - strand at 724.870 kb on - strand at 724.870 kb on - strand at 724.910 kb on + strand at 724.910 kb on + strand at 724.911 kb on - strand at 724.911 kb on - strand at 724.932 kb on + strand at 724.932 kb on + strand at 724.933 kb on - strand at 724.933 kb on - strand at 725.001 kb on + strand at 725.002 kb on - strand at 725.002 kb on - strand at 725.017 kb on - strand at 725.077 kb on + strand, within MCAODC_03610 at 725.078 kb on - strand, within MCAODC_03610 at 725.078 kb on - strand, within MCAODC_03610 at 725.091 kb on + strand, within MCAODC_03610 at 725.154 kb on + strand at 725.166 kb on - strand at 725.176 kb on + strand at 725.176 kb on + strand at 725.212 kb on + strand at 725.212 kb on + strand at 725.212 kb on + strand at 725.212 kb on + strand at 725.213 kb on - strand at 725.213 kb on - strand at 725.213 kb on - strand at 725.213 kb on - strand at 725.213 kb on - strand at 725.217 kb on + strand at 725.217 kb on + strand at 725.218 kb on - strand at 725.226 kb on - strand at 725.318 kb on + strand at 725.328 kb on + strand at 725.344 kb on + strand, within malE at 725.344 kb on + strand, within malE at 725.345 kb on - strand, within malE at 725.394 kb on + strand, within malE at 725.395 kb on - strand, within malE at 725.473 kb on - strand, within malE at 725.504 kb on - strand, within malE at 725.571 kb on + strand, within malE at 725.586 kb on - strand, within malE at 725.586 kb on - strand, within malE at 725.590 kb on + strand, within malE at 725.590 kb on + strand, within malE at 725.590 kb on + strand, within malE at 725.644 kb on + strand, within malE at 725.645 kb on - strand, within malE at 725.645 kb on - strand, within malE at 725.647 kb on - strand, within malE at 725.724 kb on + strand, within malE at 725.758 kb on + strand, within malE at 725.758 kb on + strand, within malE at 725.758 kb on + strand, within malE at 725.758 kb on + strand, within malE at 725.758 kb on + strand, within malE at 725.758 kb on + strand, within malE at 725.759 kb on - strand, within malE at 725.759 kb on - strand, within malE at 725.759 kb on - strand, within malE at 725.759 kb on - strand, within malE at 725.794 kb on + strand, within malE at 725.806 kb on + strand, within malE at 725.807 kb on - strand, within malE at 725.807 kb on - strand, within malE at 725.807 kb on - strand, within malE at 725.829 kb on + strand, within malE at 725.829 kb on + strand, within malE at 725.946 kb on + strand, within malE at 725.947 kb on - strand, within malE at 725.949 kb on + strand, within malE at 725.950 kb on - strand, within malE at 725.950 kb on - strand, within malE at 725.971 kb on - strand, within malE at 726.026 kb on + strand, within malE at 726.026 kb on + strand, within malE at 726.027 kb on - strand, within malE at 726.027 kb on - strand, within malE at 726.060 kb on + strand, within malE at 726.060 kb on + strand, within malE at 726.061 kb on - strand, within malE at 726.061 kb on - strand, within malE at 726.061 kb on - strand, within malE at 726.091 kb on - strand, within malE
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 724,155 - malK MCAODC_03605 0.37 -2.4 724,189 + malK MCAODC_03605 0.40 +0.2 724,189 + malK MCAODC_03605 0.40 -0.2 724,189 + malK MCAODC_03605 0.40 -0.1 724,190 - malK MCAODC_03605 0.41 +0.0 724,190 - malK MCAODC_03605 0.41 +1.9 724,190 - malK MCAODC_03605 0.41 -0.5 724,288 + malK MCAODC_03605 0.49 -0.6 724,289 - malK MCAODC_03605 0.49 +2.4 724,289 - malK MCAODC_03605 0.49 -1.9 724,334 + malK MCAODC_03605 0.53 +0.8 724,492 - malK MCAODC_03605 0.68 +0.3 724,524 - malK MCAODC_03605 0.70 -0.2 724,579 - malK MCAODC_03605 0.75 -0.3 724,579 - malK MCAODC_03605 0.75 +1.4 724,603 + malK MCAODC_03605 0.78 -0.3 724,604 - malK MCAODC_03605 0.78 -1.6 724,719 + malK MCAODC_03605 0.88 -1.1 724,719 + malK MCAODC_03605 0.88 +0.6 724,720 - malK MCAODC_03605 0.88 -0.8 724,720 - malK MCAODC_03605 0.88 -0.7 724,790 + -0.3 724,842 + -0.3 724,842 + -1.2 724,842 + +0.9 724,842 + -0.4 724,843 - +0.7 724,843 - -1.2 724,843 - +0.9 724,870 - -0.1 724,870 - -0.1 724,870 - +0.6 724,910 + -1.1 724,910 + +0.6 724,911 - -0.7 724,911 - +3.0 724,932 + -0.4 724,932 + -0.1 724,933 - +0.1 724,933 - -0.4 725,001 + +0.2 725,002 - +0.8 725,002 - +0.5 725,017 - -1.0 725,077 + MCAODC_03610 0.49 +0.6 725,078 - MCAODC_03610 0.50 -0.6 725,078 - MCAODC_03610 0.50 +1.4 725,091 + MCAODC_03610 0.64 +1.1 725,154 + +0.5 725,166 - +0.9 725,176 + -0.1 725,176 + +0.1 725,212 + +0.5 725,212 + -2.2 725,212 + +0.0 725,212 + +0.1 725,213 - +0.9 725,213 - -0.0 725,213 - -0.5 725,213 - -0.2 725,213 - +0.6 725,217 + -0.8 725,217 + +0.6 725,218 - -1.3 725,226 - -0.2 725,318 + +0.2 725,328 + +1.4 725,344 + malE MCAODC_03615 0.11 +0.2 725,344 + malE MCAODC_03615 0.11 -0.1 725,345 - malE MCAODC_03615 0.11 +0.2 725,394 + malE MCAODC_03615 0.15 +0.1 725,395 - malE MCAODC_03615 0.15 +1.4 725,473 - malE MCAODC_03615 0.21 +0.2 725,504 - malE MCAODC_03615 0.24 -1.3 725,571 + malE MCAODC_03615 0.30 -0.5 725,586 - malE MCAODC_03615 0.31 -0.1 725,586 - malE MCAODC_03615 0.31 +0.3 725,590 + malE MCAODC_03615 0.31 -0.2 725,590 + malE MCAODC_03615 0.31 -0.4 725,590 + malE MCAODC_03615 0.31 -0.3 725,644 + malE MCAODC_03615 0.36 -0.2 725,645 - malE MCAODC_03615 0.36 +1.8 725,645 - malE MCAODC_03615 0.36 -0.4 725,647 - malE MCAODC_03615 0.36 +1.0 725,724 + malE MCAODC_03615 0.42 -1.3 725,758 + malE MCAODC_03615 0.45 -3.6 725,758 + malE MCAODC_03615 0.45 -0.3 725,758 + malE MCAODC_03615 0.45 -1.4 725,758 + malE MCAODC_03615 0.45 -0.5 725,758 + malE MCAODC_03615 0.45 -0.4 725,758 + malE MCAODC_03615 0.45 -0.1 725,759 - malE MCAODC_03615 0.45 +0.3 725,759 - malE MCAODC_03615 0.45 +0.1 725,759 - malE MCAODC_03615 0.45 -0.4 725,759 - malE MCAODC_03615 0.45 +0.4 725,794 + malE MCAODC_03615 0.48 +0.5 725,806 + malE MCAODC_03615 0.49 -1.2 725,807 - malE MCAODC_03615 0.49 -0.1 725,807 - malE MCAODC_03615 0.49 +1.0 725,807 - malE MCAODC_03615 0.49 -0.4 725,829 + malE MCAODC_03615 0.51 +1.1 725,829 + malE MCAODC_03615 0.51 -0.3 725,946 + malE MCAODC_03615 0.61 +0.5 725,947 - malE MCAODC_03615 0.61 +0.0 725,949 + malE MCAODC_03615 0.61 +0.9 725,950 - malE MCAODC_03615 0.61 +0.4 725,950 - malE MCAODC_03615 0.61 -0.5 725,971 - malE MCAODC_03615 0.63 +0.3 726,026 + malE MCAODC_03615 0.68 -0.0 726,026 + malE MCAODC_03615 0.68 -0.4 726,027 - malE MCAODC_03615 0.68 -1.1 726,027 - malE MCAODC_03615 0.68 +0.1 726,060 + malE MCAODC_03615 0.71 +0.1 726,060 + malE MCAODC_03615 0.71 -1.9 726,061 - malE MCAODC_03615 0.71 -2.3 726,061 - malE MCAODC_03615 0.71 -2.1 726,061 - malE MCAODC_03615 0.71 -0.6 726,091 - malE MCAODC_03615 0.73 -1.7
Or see this region's nucleotide sequence