Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prfC and yjjG are separated by 63 nucleotides yjjG and rimI are separated by 14 nucleotides rimI and holD overlap by 32 nucleotides holD and rsmC are separated by 102 nucleotides
MCAODC_01795: prfC - peptide chain release factor 3, at 346,592 to 348,208
prfC
MCAODC_01800: yjjG - pyrimidine 5'-nucleotidase, at 348,272 to 348,949
yjjG
MCAODC_01805: rimI - ribosomal protein S18-alanine N-acetyltransferase, at 348,964 to 349,410
rimI
MCAODC_01810: holD - DNA polymerase III subunit psi, at 349,379 to 349,792
holD
MCAODC_01815: rsmC - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 349,895 to 350,926
rsmC
Position (kb) 348
349
350 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 347.968 kb on + strand, within prfC at 347.968 kb on + strand, within prfC at 347.968 kb on + strand, within prfC at 347.968 kb on + strand, within prfC at 347.968 kb on + strand, within prfC at 347.969 kb on - strand, within prfC at 347.969 kb on - strand, within prfC at 347.969 kb on - strand, within prfC at 347.969 kb on - strand, within prfC at 347.969 kb on - strand, within prfC at 347.971 kb on + strand, within prfC at 347.971 kb on + strand, within prfC at 347.972 kb on - strand, within prfC at 347.972 kb on - strand, within prfC at 348.016 kb on + strand, within prfC at 348.044 kb on + strand, within prfC at 348.044 kb on + strand, within prfC at 348.045 kb on - strand, within prfC at 348.100 kb on + strand at 348.100 kb on + strand at 348.100 kb on + strand at 348.127 kb on + strand at 348.165 kb on + strand at 348.165 kb on + strand at 348.166 kb on - strand at 348.182 kb on - strand at 348.182 kb on - strand at 348.182 kb on - strand at 348.244 kb on - strand at 348.248 kb on + strand at 348.280 kb on + strand at 348.280 kb on + strand at 348.281 kb on - strand at 348.281 kb on - strand at 348.281 kb on - strand at 348.494 kb on - strand, within yjjG at 348.544 kb on - strand, within yjjG at 348.544 kb on - strand, within yjjG at 348.544 kb on - strand, within yjjG at 348.544 kb on - strand, within yjjG at 348.589 kb on + strand, within yjjG at 348.688 kb on + strand, within yjjG at 348.688 kb on + strand, within yjjG at 348.688 kb on + strand, within yjjG at 348.691 kb on + strand, within yjjG at 348.692 kb on - strand, within yjjG at 348.692 kb on - strand, within yjjG at 348.692 kb on - strand, within yjjG at 348.709 kb on + strand, within yjjG at 348.710 kb on - strand, within yjjG at 348.710 kb on - strand, within yjjG at 348.768 kb on - strand, within yjjG at 348.768 kb on - strand, within yjjG at 348.826 kb on - strand, within yjjG at 348.826 kb on - strand, within yjjG at 348.847 kb on + strand, within yjjG at 348.862 kb on - strand, within yjjG at 348.904 kb on + strand at 348.904 kb on + strand at 348.950 kb on + strand at 348.951 kb on - strand at 348.965 kb on + strand at 348.965 kb on + strand at 348.965 kb on + strand at 348.966 kb on - strand at 348.966 kb on - strand at 348.966 kb on - strand at 348.969 kb on + strand at 348.970 kb on - strand at 349.025 kb on + strand, within rimI at 349.026 kb on - strand, within rimI at 349.026 kb on - strand, within rimI at 349.026 kb on - strand, within rimI at 349.112 kb on - strand, within rimI at 349.112 kb on - strand, within rimI at 349.112 kb on - strand, within rimI at 349.112 kb on - strand, within rimI at 349.187 kb on + strand, within rimI at 349.188 kb on - strand, within rimI at 349.188 kb on - strand, within rimI at 349.188 kb on - strand, within rimI at 349.206 kb on + strand, within rimI at 349.218 kb on + strand, within rimI at 349.218 kb on + strand, within rimI at 349.218 kb on + strand, within rimI at 349.218 kb on + strand, within rimI at 349.218 kb on + strand, within rimI at 349.218 kb on + strand, within rimI at 349.218 kb on + strand, within rimI at 349.218 kb on + strand, within rimI at 349.219 kb on - strand, within rimI at 349.219 kb on - strand, within rimI at 349.219 kb on - strand, within rimI at 349.219 kb on - strand, within rimI at 349.219 kb on - strand, within rimI at 349.365 kb on - strand, within rimI at 349.410 kb on + strand at 349.410 kb on + strand at 349.410 kb on + strand at 349.410 kb on + strand at 349.410 kb on + strand at 349.410 kb on + strand at 349.411 kb on - strand at 349.411 kb on - strand at 349.411 kb on - strand at 349.411 kb on - strand at 349.411 kb on - strand at 349.411 kb on - strand at 349.411 kb on - strand at 349.751 kb on - strand at 349.792 kb on + strand at 349.793 kb on - strand at 349.824 kb on + strand at 349.827 kb on - strand at 349.854 kb on + strand at 349.854 kb on + strand at 349.855 kb on - strand at 349.855 kb on - strand at 349.855 kb on - strand at 349.855 kb on - strand at 349.855 kb on - strand at 349.855 kb on - strand at 349.855 kb on - strand at 349.855 kb on - strand at 349.855 kb on - strand at 349.855 kb on - strand at 349.861 kb on - strand at 349.861 kb on - strand at 349.862 kb on + strand at 349.875 kb on + strand at 349.906 kb on + strand at 349.906 kb on + strand at 349.907 kb on - strand at 349.960 kb on + strand at 349.960 kb on + strand at 349.981 kb on - strand at 350.004 kb on + strand, within rsmC at 350.004 kb on + strand, within rsmC at 350.005 kb on - strand, within rsmC at 350.005 kb on - strand, within rsmC at 350.008 kb on + strand, within rsmC at 350.029 kb on + strand, within rsmC at 350.089 kb on + strand, within rsmC at 350.138 kb on + strand, within rsmC at 350.139 kb on - strand, within rsmC at 350.141 kb on + strand, within rsmC at 350.142 kb on - strand, within rsmC at 350.187 kb on + strand, within rsmC at 350.188 kb on - strand, within rsmC at 350.277 kb on - strand, within rsmC at 350.290 kb on + strand, within rsmC at 350.321 kb on + strand, within rsmC at 350.379 kb on - strand, within rsmC at 350.379 kb on - strand, within rsmC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 347,968 + prfC MCAODC_01795 0.85 +0.9 347,968 + prfC MCAODC_01795 0.85 -2.1 347,968 + prfC MCAODC_01795 0.85 -2.9 347,968 + prfC MCAODC_01795 0.85 -2.1 347,968 + prfC MCAODC_01795 0.85 -3.2 347,969 - prfC MCAODC_01795 0.85 +0.4 347,969 - prfC MCAODC_01795 0.85 -0.7 347,969 - prfC MCAODC_01795 0.85 -4.2 347,969 - prfC MCAODC_01795 0.85 -1.3 347,969 - prfC MCAODC_01795 0.85 -0.7 347,971 + prfC MCAODC_01795 0.85 -0.9 347,971 + prfC MCAODC_01795 0.85 +0.2 347,972 - prfC MCAODC_01795 0.85 -1.5 347,972 - prfC MCAODC_01795 0.85 -0.7 348,016 + prfC MCAODC_01795 0.88 +0.1 348,044 + prfC MCAODC_01795 0.90 -1.4 348,044 + prfC MCAODC_01795 0.90 -2.3 348,045 - prfC MCAODC_01795 0.90 +0.1 348,100 + -0.0 348,100 + -4.0 348,100 + -1.1 348,127 + +0.3 348,165 + -1.6 348,165 + -0.1 348,166 - +3.0 348,182 - +0.6 348,182 - -1.8 348,182 - -1.7 348,244 - -1.1 348,248 + -1.2 348,280 + -0.5 348,280 + +0.1 348,281 - -0.0 348,281 - -0.0 348,281 - -2.2 348,494 - yjjG MCAODC_01800 0.33 -1.1 348,544 - yjjG MCAODC_01800 0.40 -0.2 348,544 - yjjG MCAODC_01800 0.40 +1.3 348,544 - yjjG MCAODC_01800 0.40 -0.0 348,544 - yjjG MCAODC_01800 0.40 +0.8 348,589 + yjjG MCAODC_01800 0.47 -1.7 348,688 + yjjG MCAODC_01800 0.61 -0.1 348,688 + yjjG MCAODC_01800 0.61 +0.4 348,688 + yjjG MCAODC_01800 0.61 -0.8 348,691 + yjjG MCAODC_01800 0.62 +0.2 348,692 - yjjG MCAODC_01800 0.62 -0.6 348,692 - yjjG MCAODC_01800 0.62 -0.7 348,692 - yjjG MCAODC_01800 0.62 +0.4 348,709 + yjjG MCAODC_01800 0.64 +0.5 348,710 - yjjG MCAODC_01800 0.65 -0.6 348,710 - yjjG MCAODC_01800 0.65 -0.3 348,768 - yjjG MCAODC_01800 0.73 +0.1 348,768 - yjjG MCAODC_01800 0.73 -0.7 348,826 - yjjG MCAODC_01800 0.82 -0.9 348,826 - yjjG MCAODC_01800 0.82 -0.7 348,847 + yjjG MCAODC_01800 0.85 +1.0 348,862 - yjjG MCAODC_01800 0.87 -0.7 348,904 + -0.2 348,904 + -0.4 348,950 + -0.3 348,951 - -1.6 348,965 + +0.3 348,965 + +0.8 348,965 + -0.0 348,966 - -1.1 348,966 - +2.1 348,966 - +1.5 348,969 + +0.7 348,970 - +0.4 349,025 + rimI MCAODC_01805 0.14 -0.4 349,026 - rimI MCAODC_01805 0.14 +1.5 349,026 - rimI MCAODC_01805 0.14 +0.6 349,026 - rimI MCAODC_01805 0.14 +0.3 349,112 - rimI MCAODC_01805 0.33 +0.3 349,112 - rimI MCAODC_01805 0.33 +1.8 349,112 - rimI MCAODC_01805 0.33 +1.0 349,112 - rimI MCAODC_01805 0.33 +0.4 349,187 + rimI MCAODC_01805 0.50 +0.3 349,188 - rimI MCAODC_01805 0.50 +0.4 349,188 - rimI MCAODC_01805 0.50 +1.5 349,188 - rimI MCAODC_01805 0.50 +0.7 349,206 + rimI MCAODC_01805 0.54 +1.1 349,218 + rimI MCAODC_01805 0.57 -1.9 349,218 + rimI MCAODC_01805 0.57 +0.6 349,218 + rimI MCAODC_01805 0.57 +0.5 349,218 + rimI MCAODC_01805 0.57 +1.8 349,218 + rimI MCAODC_01805 0.57 -1.0 349,218 + rimI MCAODC_01805 0.57 -2.0 349,218 + rimI MCAODC_01805 0.57 -0.1 349,218 + rimI MCAODC_01805 0.57 +0.0 349,219 - rimI MCAODC_01805 0.57 +0.3 349,219 - rimI MCAODC_01805 0.57 +0.2 349,219 - rimI MCAODC_01805 0.57 +0.2 349,219 - rimI MCAODC_01805 0.57 +0.9 349,219 - rimI MCAODC_01805 0.57 +0.6 349,365 - rimI MCAODC_01805 0.90 +0.6 349,410 + -0.0 349,410 + +0.3 349,410 + +0.8 349,410 + +0.4 349,410 + +1.0 349,410 + +0.2 349,411 - +0.2 349,411 - +1.3 349,411 - -3.0 349,411 - +0.2 349,411 - +3.1 349,411 - +2.0 349,411 - -1.0 349,751 - -0.8 349,792 + +0.1 349,793 - -0.6 349,824 + -0.9 349,827 - +0.0 349,854 + -0.7 349,854 + +0.0 349,855 - -0.5 349,855 - -0.4 349,855 - -0.5 349,855 - +1.6 349,855 - +0.9 349,855 - +0.1 349,855 - -0.8 349,855 - -0.2 349,855 - +0.4 349,855 - -0.9 349,861 - -0.3 349,861 - -0.1 349,862 + -0.3 349,875 + -0.5 349,906 + +0.9 349,906 + -0.3 349,907 - -0.2 349,960 + -0.1 349,960 + -0.8 349,981 - +0.2 350,004 + rsmC MCAODC_01815 0.11 -0.9 350,004 + rsmC MCAODC_01815 0.11 -1.6 350,005 - rsmC MCAODC_01815 0.11 +0.5 350,005 - rsmC MCAODC_01815 0.11 -0.4 350,008 + rsmC MCAODC_01815 0.11 +0.6 350,029 + rsmC MCAODC_01815 0.13 -0.6 350,089 + rsmC MCAODC_01815 0.19 -0.3 350,138 + rsmC MCAODC_01815 0.24 -1.4 350,139 - rsmC MCAODC_01815 0.24 +0.3 350,141 + rsmC MCAODC_01815 0.24 +0.1 350,142 - rsmC MCAODC_01815 0.24 +0.2 350,187 + rsmC MCAODC_01815 0.28 +0.7 350,188 - rsmC MCAODC_01815 0.28 +0.3 350,277 - rsmC MCAODC_01815 0.37 +0.5 350,290 + rsmC MCAODC_01815 0.38 -0.1 350,321 + rsmC MCAODC_01815 0.41 +0.1 350,379 - rsmC MCAODC_01815 0.47 -3.0 350,379 - rsmC MCAODC_01815 0.47 +1.3
Or see this region's nucleotide sequence