Strain Fitness in Escherichia coli ECRC101 around MCAODC_00205

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphoE and crl are separated by 38 nucleotidescrl and frsA are separated by 57 nucleotides MCAODC_00200: phoE - phosphoporin PhoE, at 17,383 to 18,438 phoE MCAODC_00205: crl - sigma factor-binding protein Crl, at 18,477 to 18,878 crl MCAODC_00210: frsA - esterase FrsA, at 18,936 to 20,180 frsA Position (kb) 18 19Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 17.509 kb on + strand, within phoEat 17.529 kb on + strand, within phoEat 17.549 kb on - strand, within phoEat 17.692 kb on + strand, within phoEat 17.740 kb on + strand, within phoEat 17.740 kb on + strand, within phoEat 17.740 kb on + strand, within phoEat 17.740 kb on + strand, within phoEat 17.740 kb on + strand, within phoEat 17.741 kb on - strand, within phoEat 17.741 kb on - strand, within phoEat 17.741 kb on - strand, within phoEat 17.763 kb on + strand, within phoEat 17.763 kb on + strand, within phoEat 17.764 kb on - strand, within phoEat 17.843 kb on - strand, within phoEat 17.965 kb on + strand, within phoEat 17.965 kb on + strand, within phoEat 17.966 kb on - strand, within phoEat 17.995 kb on - strand, within phoEat 18.006 kb on + strand, within phoEat 18.007 kb on - strand, within phoEat 18.007 kb on - strand, within phoEat 18.092 kb on - strand, within phoEat 18.110 kb on - strand, within phoEat 18.152 kb on + strand, within phoEat 18.152 kb on + strand, within phoEat 18.262 kb on - strand, within phoEat 18.295 kb on + strand, within phoEat 18.397 kb on - strandat 18.611 kb on + strand, within crlat 18.612 kb on - strand, within crlat 18.612 kb on - strand, within crlat 18.612 kb on - strand, within crlat 18.667 kb on + strand, within crlat 18.667 kb on + strand, within crlat 18.673 kb on + strand, within crlat 18.673 kb on + strand, within crlat 18.677 kb on + strand, within crlat 18.678 kb on - strand, within crlat 18.678 kb on - strand, within crlat 18.800 kb on + strand, within crlat 18.801 kb on - strand, within crlat 18.813 kb on - strand, within crlat 18.813 kb on - strand, within crlat 18.815 kb on - strand, within crlat 18.823 kb on - strand, within crlat 19.053 kb on + strandat 19.054 kb on - strandat 19.149 kb on + strand, within frsAat 19.150 kb on - strand, within frsAat 19.232 kb on - strand, within frsAat 19.232 kb on - strand, within frsAat 19.284 kb on + strand, within frsAat 19.330 kb on + strand, within frsAat 19.331 kb on - strand, within frsAat 19.404 kb on + strand, within frsAat 19.404 kb on + strand, within frsAat 19.405 kb on - strand, within frsAat 19.422 kb on + strand, within frsAat 19.493 kb on + strand, within frsAat 19.493 kb on + strand, within frsAat 19.494 kb on - strand, within frsAat 19.499 kb on + strand, within frsAat 19.499 kb on + strand, within frsAat 19.531 kb on + strand, within frsAat 19.540 kb on + strand, within frsAat 19.540 kb on + strand, within frsAat 19.541 kb on - strand, within frsAat 19.549 kb on + strand, within frsAat 19.550 kb on - strand, within frsAat 19.552 kb on + strand, within frsAat 19.552 kb on + strand, within frsAat 19.553 kb on - strand, within frsAat 19.587 kb on + strand, within frsAat 19.587 kb on + strand, within frsAat 19.587 kb on + strand, within frsAat 19.587 kb on + strand, within frsAat 19.590 kb on + strand, within frsAat 19.712 kb on - strand, within frsAat 19.786 kb on + strand, within frsAat 19.786 kb on + strand, within frsA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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17,509 + phoE MCAODC_00200 0.12 +0.4
17,529 + phoE MCAODC_00200 0.14 -0.3
17,549 - phoE MCAODC_00200 0.16 +0.7
17,692 + phoE MCAODC_00200 0.29 -1.7
17,740 + phoE MCAODC_00200 0.34 -0.9
17,740 + phoE MCAODC_00200 0.34 -0.5
17,740 + phoE MCAODC_00200 0.34 -0.1
17,740 + phoE MCAODC_00200 0.34 -0.5
17,740 + phoE MCAODC_00200 0.34 -0.7
17,741 - phoE MCAODC_00200 0.34 +0.8
17,741 - phoE MCAODC_00200 0.34 +2.0
17,741 - phoE MCAODC_00200 0.34 +0.7
17,763 + phoE MCAODC_00200 0.36 +1.2
17,763 + phoE MCAODC_00200 0.36 -3.7
17,764 - phoE MCAODC_00200 0.36 +1.5
17,843 - phoE MCAODC_00200 0.44 +0.5
17,965 + phoE MCAODC_00200 0.55 +1.3
17,965 + phoE MCAODC_00200 0.55 +1.3
17,966 - phoE MCAODC_00200 0.55 +0.7
17,995 - phoE MCAODC_00200 0.58 -0.0
18,006 + phoE MCAODC_00200 0.59 +0.9
18,007 - phoE MCAODC_00200 0.59 -0.8
18,007 - phoE MCAODC_00200 0.59 +0.4
18,092 - phoE MCAODC_00200 0.67 +1.3
18,110 - phoE MCAODC_00200 0.69 -0.6
18,152 + phoE MCAODC_00200 0.73 -1.1
18,152 + phoE MCAODC_00200 0.73 +0.2
18,262 - phoE MCAODC_00200 0.83 -0.2
18,295 + phoE MCAODC_00200 0.86 +0.8
18,397 - +0.4
18,611 + crl MCAODC_00205 0.33 +1.1
18,612 - crl MCAODC_00205 0.34 +1.3
18,612 - crl MCAODC_00205 0.34 +1.3
18,612 - crl MCAODC_00205 0.34 +1.7
18,667 + crl MCAODC_00205 0.47 +0.3
18,667 + crl MCAODC_00205 0.47 +0.9
18,673 + crl MCAODC_00205 0.49 +1.3
18,673 + crl MCAODC_00205 0.49 +1.3
18,677 + crl MCAODC_00205 0.50 +1.4
18,678 - crl MCAODC_00205 0.50 -0.2
18,678 - crl MCAODC_00205 0.50 +1.2
18,800 + crl MCAODC_00205 0.80 -0.0
18,801 - crl MCAODC_00205 0.81 +1.0
18,813 - crl MCAODC_00205 0.84 +1.5
18,813 - crl MCAODC_00205 0.84 +0.7
18,815 - crl MCAODC_00205 0.84 +1.4
18,823 - crl MCAODC_00205 0.86 -0.1
19,053 + -2.4
19,054 - +1.0
19,149 + frsA MCAODC_00210 0.17 +1.4
19,150 - frsA MCAODC_00210 0.17 +0.5
19,232 - frsA MCAODC_00210 0.24 -0.9
19,232 - frsA MCAODC_00210 0.24 +0.5
19,284 + frsA MCAODC_00210 0.28 +0.9
19,330 + frsA MCAODC_00210 0.32 +0.7
19,331 - frsA MCAODC_00210 0.32 -0.3
19,404 + frsA MCAODC_00210 0.38 +0.2
19,404 + frsA MCAODC_00210 0.38 +0.7
19,405 - frsA MCAODC_00210 0.38 -0.0
19,422 + frsA MCAODC_00210 0.39 -1.3
19,493 + frsA MCAODC_00210 0.45 -0.3
19,493 + frsA MCAODC_00210 0.45 -0.2
19,494 - frsA MCAODC_00210 0.45 -0.5
19,499 + frsA MCAODC_00210 0.45 +0.4
19,499 + frsA MCAODC_00210 0.45 +1.1
19,531 + frsA MCAODC_00210 0.48 +0.8
19,540 + frsA MCAODC_00210 0.49 +1.2
19,540 + frsA MCAODC_00210 0.49 -0.4
19,541 - frsA MCAODC_00210 0.49 +1.0
19,549 + frsA MCAODC_00210 0.49 +0.5
19,550 - frsA MCAODC_00210 0.49 +0.4
19,552 + frsA MCAODC_00210 0.49 +0.7
19,552 + frsA MCAODC_00210 0.49 -0.8
19,553 - frsA MCAODC_00210 0.50 -0.6
19,587 + frsA MCAODC_00210 0.52 -0.4
19,587 + frsA MCAODC_00210 0.52 -0.1
19,587 + frsA MCAODC_00210 0.52 +1.3
19,587 + frsA MCAODC_00210 0.52 +0.9
19,590 + frsA MCAODC_00210 0.53 -0.9
19,712 - frsA MCAODC_00210 0.62 +1.2
19,786 + frsA MCAODC_00210 0.68 +0.5
19,786 + frsA MCAODC_00210 0.68 -0.2

Or see this region's nucleotide sequence