Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04715

Experiment: Bas36

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfimB and ttcA are separated by 52 nucleotidesttcA and dbpA are separated by 128 nucleotides JDDGAC_04710: fimB - site-specific integrase, at 816,526 to 817,761 fimB JDDGAC_04715: ttcA - tRNA 2-thiocytidine(32) synthetase TtcA, at 817,814 to 818,749 ttcA JDDGAC_04720: dbpA - ATP-dependent RNA helicase DbpA, at 818,878 to 820,251 dbpA Position (kb) 817 818 819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 817.305 kb on + strand, within fimBat 817.306 kb on - strand, within fimBat 817.365 kb on + strand, within fimBat 817.387 kb on + strand, within fimBat 817.516 kb on + strand, within fimBat 817.647 kb on + strandat 817.647 kb on + strandat 817.649 kb on + strandat 817.737 kb on + strandat 817.850 kb on + strandat 817.866 kb on + strandat 817.970 kb on + strand, within ttcAat 817.971 kb on - strand, within ttcAat 818.039 kb on - strand, within ttcAat 818.112 kb on - strand, within ttcAat 818.135 kb on + strand, within ttcAat 818.135 kb on + strand, within ttcAat 818.135 kb on + strand, within ttcAat 818.135 kb on + strand, within ttcAat 818.135 kb on + strand, within ttcAat 818.136 kb on - strand, within ttcAat 818.197 kb on - strand, within ttcAat 818.292 kb on + strand, within ttcAat 818.292 kb on + strand, within ttcAat 818.296 kb on + strand, within ttcAat 818.296 kb on + strand, within ttcAat 818.297 kb on - strand, within ttcAat 818.323 kb on + strand, within ttcAat 818.465 kb on - strand, within ttcAat 818.528 kb on - strand, within ttcAat 818.789 kb on + strandat 818.790 kb on - strandat 818.914 kb on - strandat 818.976 kb on - strandat 818.976 kb on - strandat 819.049 kb on + strand, within dbpAat 819.135 kb on + strand, within dbpAat 819.136 kb on - strand, within dbpAat 819.136 kb on - strand, within dbpAat 819.166 kb on + strand, within dbpAat 819.331 kb on - strand, within dbpAat 819.371 kb on - strand, within dbpAat 819.371 kb on - strand, within dbpAat 819.460 kb on + strand, within dbpAat 819.461 kb on - strand, within dbpA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas36
remove
817,305 + fimB JDDGAC_04710 0.63 +1.2
817,306 - fimB JDDGAC_04710 0.63 -0.9
817,365 + fimB JDDGAC_04710 0.68 -1.2
817,387 + fimB JDDGAC_04710 0.70 -0.7
817,516 + fimB JDDGAC_04710 0.80 +0.3
817,647 + -1.0
817,647 + -0.8
817,649 + -2.1
817,737 + -0.1
817,850 + +0.0
817,866 + +0.5
817,970 + ttcA JDDGAC_04715 0.17 -1.5
817,971 - ttcA JDDGAC_04715 0.17 +1.2
818,039 - ttcA JDDGAC_04715 0.24 +1.4
818,112 - ttcA JDDGAC_04715 0.32 +1.9
818,135 + ttcA JDDGAC_04715 0.34 +0.0
818,135 + ttcA JDDGAC_04715 0.34 +0.6
818,135 + ttcA JDDGAC_04715 0.34 +0.5
818,135 + ttcA JDDGAC_04715 0.34 +0.0
818,135 + ttcA JDDGAC_04715 0.34 +0.3
818,136 - ttcA JDDGAC_04715 0.34 +1.4
818,197 - ttcA JDDGAC_04715 0.41 +0.1
818,292 + ttcA JDDGAC_04715 0.51 +1.2
818,292 + ttcA JDDGAC_04715 0.51 +1.5
818,296 + ttcA JDDGAC_04715 0.51 +0.3
818,296 + ttcA JDDGAC_04715 0.51 +0.7
818,297 - ttcA JDDGAC_04715 0.52 +0.3
818,323 + ttcA JDDGAC_04715 0.54 -0.8
818,465 - ttcA JDDGAC_04715 0.70 +1.7
818,528 - ttcA JDDGAC_04715 0.76 +1.7
818,789 + -0.6
818,790 - +0.3
818,914 - -0.8
818,976 - +0.8
818,976 - +0.5
819,049 + dbpA JDDGAC_04720 0.12 +2.7
819,135 + dbpA JDDGAC_04720 0.19 -2.8
819,136 - dbpA JDDGAC_04720 0.19 +0.0
819,136 - dbpA JDDGAC_04720 0.19 +0.2
819,166 + dbpA JDDGAC_04720 0.21 +0.7
819,331 - dbpA JDDGAC_04720 0.33 -1.1
819,371 - dbpA JDDGAC_04720 0.36 -0.5
819,371 - dbpA JDDGAC_04720 0.36 -1.0
819,460 + dbpA JDDGAC_04720 0.42 -0.1
819,461 - dbpA JDDGAC_04720 0.42 +1.3

Or see this region's nucleotide sequence