Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_23545 and yqeL overlap by 25 nucleotides yqeL and yqeJ are separated by 32 nucleotides yqeJ and yqeI overlap by 4 nucleotides yqeI and JDDGAC_23565 are separated by 120 nucleotides JDDGAC_23565 and yqeH are separated by 70 nucleotides
JDDGAC_23545: JDDGAC_23545 - Uncharacterized protein YqeK, at 4,507,678 to 4,508,103
_23545
JDDGAC_23550: yqeL - Uncharacterized protein YqeL, at 4,508,079 to 4,508,219
yqeL
JDDGAC_23555: yqeJ - Uncharacterized protein YqeJ, at 4,508,252 to 4,508,731
yqeJ
JDDGAC_23560: yqeI - Uncharacterized protein YqeI, at 4,508,728 to 4,509,537
yqeI
JDDGAC_23565: JDDGAC_23565 - hypothetical protein, at 4,509,658 to 4,509,789
_23565
JDDGAC_23570: yqeH - Uncharacterized protein YqeH, at 4,509,860 to 4,510,492
yqeH
Position (kb) 4508
4509
4510 Strain fitness (log2 ratio) -2
-1
0
1 at 4507.890 kb on + strand, within JDDGAC_23545 at 4508.105 kb on - strand, within yqeL at 4508.105 kb on - strand, within yqeL at 4509.068 kb on - strand, within yqeI at 4509.174 kb on + strand, within yqeI at 4509.197 kb on - strand, within yqeI at 4509.200 kb on - strand, within yqeI at 4509.217 kb on - strand, within yqeI at 4509.217 kb on - strand, within yqeI at 4509.274 kb on - strand, within yqeI at 4509.313 kb on + strand, within yqeI at 4509.325 kb on + strand, within yqeI at 4509.337 kb on - strand, within yqeI at 4509.337 kb on - strand, within yqeI at 4509.459 kb on + strand at 4509.471 kb on + strand at 4509.471 kb on + strand at 4509.592 kb on - strand at 4509.765 kb on + strand, within JDDGAC_23565 at 4509.801 kb on - strand at 4510.124 kb on - strand, within yqeH at 4510.330 kb on + strand, within yqeH at 4510.330 kb on + strand, within yqeH at 4510.462 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,507,890 + JDDGAC_23545 0.50 +1.3 4,508,105 - yqeL JDDGAC_23550 0.18 -0.2 4,508,105 - yqeL JDDGAC_23550 0.18 +0.4 4,509,068 - yqeI JDDGAC_23560 0.42 +1.5 4,509,174 + yqeI JDDGAC_23560 0.55 -0.9 4,509,197 - yqeI JDDGAC_23560 0.58 -1.5 4,509,200 - yqeI JDDGAC_23560 0.58 -2.5 4,509,217 - yqeI JDDGAC_23560 0.60 +0.6 4,509,217 - yqeI JDDGAC_23560 0.60 +1.6 4,509,274 - yqeI JDDGAC_23560 0.67 +0.4 4,509,313 + yqeI JDDGAC_23560 0.72 +0.9 4,509,325 + yqeI JDDGAC_23560 0.74 +0.5 4,509,337 - yqeI JDDGAC_23560 0.75 +1.0 4,509,337 - yqeI JDDGAC_23560 0.75 +0.8 4,509,459 + -1.1 4,509,471 + +0.6 4,509,471 + +0.1 4,509,592 - -2.3 4,509,765 + JDDGAC_23565 0.81 -0.4 4,509,801 - +0.5 4,510,124 - yqeH JDDGAC_23570 0.42 +1.6 4,510,330 + yqeH JDDGAC_23570 0.74 -0.6 4,510,330 + yqeH JDDGAC_23570 0.74 -2.2 4,510,462 + -1.3
Or see this region's nucleotide sequence