Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28205 and yegT overlap by 4 nucleotides yegT and fbaB are separated by 256 nucleotides
JDDGAC_28200: yegV - Uncharacterized sugar kinase YegV, at 5,403,643 to 5,404,608
yegV
JDDGAC_28205: JDDGAC_28205 - ADP-ribosylglycohydrolase family protein, at 5,404,605 to 5,405,609
_28205
JDDGAC_28210: yegT - Putative nucleoside transporter YegT, at 5,405,606 to 5,406,883
yegT
JDDGAC_28215: fbaB - class I fructose-bisphosphate aldolase, at 5,407,140 to 5,408,192
fbaB
Position (kb) 5405
5406
5407 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5404.631 kb on - strand at 5404.862 kb on + strand, within JDDGAC_28205 at 5405.190 kb on + strand, within JDDGAC_28205 at 5405.298 kb on + strand, within JDDGAC_28205 at 5405.423 kb on + strand, within JDDGAC_28205 at 5405.595 kb on - strand at 5405.888 kb on - strand, within yegT at 5405.913 kb on + strand, within yegT at 5405.913 kb on + strand, within yegT at 5405.913 kb on + strand, within yegT at 5405.914 kb on - strand, within yegT at 5405.943 kb on + strand, within yegT at 5405.948 kb on + strand, within yegT at 5405.985 kb on + strand, within yegT at 5406.013 kb on - strand, within yegT at 5406.116 kb on + strand, within yegT at 5406.199 kb on - strand, within yegT at 5406.199 kb on - strand, within yegT at 5406.301 kb on + strand, within yegT at 5406.403 kb on + strand, within yegT at 5406.403 kb on + strand, within yegT at 5406.479 kb on - strand, within yegT at 5406.547 kb on + strand, within yegT at 5406.570 kb on + strand, within yegT at 5406.571 kb on - strand, within yegT at 5406.571 kb on - strand, within yegT at 5406.571 kb on - strand, within yegT at 5406.571 kb on - strand, within yegT at 5406.636 kb on + strand, within yegT at 5406.756 kb on + strand at 5406.836 kb on - strand at 5406.888 kb on + strand at 5406.911 kb on + strand at 5406.916 kb on + strand at 5407.067 kb on + strand at 5407.067 kb on + strand at 5407.068 kb on - strand at 5407.135 kb on + strand at 5407.135 kb on + strand at 5407.136 kb on - strand at 5407.136 kb on - strand at 5407.136 kb on - strand at 5407.200 kb on - strand at 5407.200 kb on - strand at 5407.200 kb on - strand at 5407.205 kb on + strand at 5407.206 kb on - strand at 5407.224 kb on + strand at 5407.224 kb on + strand at 5407.224 kb on + strand at 5407.225 kb on - strand at 5407.247 kb on - strand, within fbaB at 5407.289 kb on - strand, within fbaB at 5407.292 kb on + strand, within fbaB at 5407.292 kb on + strand, within fbaB at 5407.292 kb on + strand, within fbaB at 5407.292 kb on + strand, within fbaB at 5407.295 kb on + strand, within fbaB at 5407.296 kb on - strand, within fbaB at 5407.457 kb on + strand, within fbaB at 5407.457 kb on + strand, within fbaB at 5407.477 kb on - strand, within fbaB at 5407.477 kb on - strand, within fbaB at 5407.573 kb on - strand, within fbaB at 5407.588 kb on - strand, within fbaB at 5407.640 kb on + strand, within fbaB at 5407.645 kb on - strand, within fbaB at 5407.740 kb on + strand, within fbaB at 5407.741 kb on - strand, within fbaB at 5407.831 kb on + strand, within fbaB at 5407.831 kb on + strand, within fbaB at 5407.831 kb on + strand, within fbaB at 5407.831 kb on + strand, within fbaB at 5407.832 kb on - strand, within fbaB at 5407.881 kb on - strand, within fbaB
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,404,631 - +0.1 5,404,862 + JDDGAC_28205 0.26 -2.3 5,405,190 + JDDGAC_28205 0.58 -1.3 5,405,298 + JDDGAC_28205 0.69 -2.4 5,405,423 + JDDGAC_28205 0.81 +1.3 5,405,595 - +0.6 5,405,888 - yegT JDDGAC_28210 0.22 -0.5 5,405,913 + yegT JDDGAC_28210 0.24 +1.4 5,405,913 + yegT JDDGAC_28210 0.24 -0.4 5,405,913 + yegT JDDGAC_28210 0.24 +0.6 5,405,914 - yegT JDDGAC_28210 0.24 -0.6 5,405,943 + yegT JDDGAC_28210 0.26 -0.1 5,405,948 + yegT JDDGAC_28210 0.27 -1.3 5,405,985 + yegT JDDGAC_28210 0.30 +3.6 5,406,013 - yegT JDDGAC_28210 0.32 -0.4 5,406,116 + yegT JDDGAC_28210 0.40 -1.5 5,406,199 - yegT JDDGAC_28210 0.46 +0.6 5,406,199 - yegT JDDGAC_28210 0.46 -0.5 5,406,301 + yegT JDDGAC_28210 0.54 -0.3 5,406,403 + yegT JDDGAC_28210 0.62 -1.9 5,406,403 + yegT JDDGAC_28210 0.62 +1.0 5,406,479 - yegT JDDGAC_28210 0.68 -0.5 5,406,547 + yegT JDDGAC_28210 0.74 -0.6 5,406,570 + yegT JDDGAC_28210 0.75 -1.1 5,406,571 - yegT JDDGAC_28210 0.76 -0.9 5,406,571 - yegT JDDGAC_28210 0.76 -0.7 5,406,571 - yegT JDDGAC_28210 0.76 +0.8 5,406,571 - yegT JDDGAC_28210 0.76 -0.8 5,406,636 + yegT JDDGAC_28210 0.81 -0.7 5,406,756 + -1.6 5,406,836 - +0.9 5,406,888 + +0.1 5,406,911 + -0.1 5,406,916 + +0.8 5,407,067 + +0.3 5,407,067 + +0.2 5,407,068 - -0.3 5,407,135 + -0.1 5,407,135 + -0.4 5,407,136 - +3.6 5,407,136 - -1.4 5,407,136 - -0.3 5,407,200 - +0.1 5,407,200 - +0.0 5,407,200 - -1.2 5,407,205 + +0.2 5,407,206 - +1.1 5,407,224 + +0.2 5,407,224 + +0.7 5,407,224 + -0.8 5,407,225 - -0.8 5,407,247 - fbaB JDDGAC_28215 0.10 -0.8 5,407,289 - fbaB JDDGAC_28215 0.14 +0.1 5,407,292 + fbaB JDDGAC_28215 0.14 -1.2 5,407,292 + fbaB JDDGAC_28215 0.14 -0.1 5,407,292 + fbaB JDDGAC_28215 0.14 +0.5 5,407,292 + fbaB JDDGAC_28215 0.14 +1.5 5,407,295 + fbaB JDDGAC_28215 0.15 +1.2 5,407,296 - fbaB JDDGAC_28215 0.15 +0.2 5,407,457 + fbaB JDDGAC_28215 0.30 +0.4 5,407,457 + fbaB JDDGAC_28215 0.30 +1.3 5,407,477 - fbaB JDDGAC_28215 0.32 -0.1 5,407,477 - fbaB JDDGAC_28215 0.32 +1.2 5,407,573 - fbaB JDDGAC_28215 0.41 +1.8 5,407,588 - fbaB JDDGAC_28215 0.43 -0.5 5,407,640 + fbaB JDDGAC_28215 0.47 +0.4 5,407,645 - fbaB JDDGAC_28215 0.48 +0.3 5,407,740 + fbaB JDDGAC_28215 0.57 -1.1 5,407,741 - fbaB JDDGAC_28215 0.57 -0.3 5,407,831 + fbaB JDDGAC_28215 0.66 -0.2 5,407,831 + fbaB JDDGAC_28215 0.66 +1.1 5,407,831 + fbaB JDDGAC_28215 0.66 +1.0 5,407,831 + fbaB JDDGAC_28215 0.66 +0.3 5,407,832 - fbaB JDDGAC_28215 0.66 -0.5 5,407,881 - fbaB JDDGAC_28215 0.70 -1.2
Or see this region's nucleotide sequence