Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psuT and yeiL are separated by 70 nucleotides yeiL and rihB are separated by 129 nucleotides rihB and nupX are separated by 99 nucleotides
JDDGAC_27420: psuT - Putative pseudouridine transporter, at 5,268,695 to 5,269,945
psuT
JDDGAC_27425: yeiL - Regulatory protein YeiL, at 5,270,016 to 5,270,714
yeiL
JDDGAC_27430: rihB - ribosylpyrimidine nucleosidase, at 5,270,844 to 5,271,785
rihB
JDDGAC_27435: nupX - Putative nucleoside permease NupX, at 5,271,885 to 5,273,135
nupX
Position (kb) 5270
5271
5272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5270.594 kb on - strand, within yeiL at 5270.746 kb on + strand at 5270.895 kb on - strand at 5270.983 kb on + strand, within rihB at 5271.021 kb on - strand, within rihB at 5271.084 kb on - strand, within rihB at 5271.162 kb on + strand, within rihB at 5271.248 kb on + strand, within rihB at 5271.249 kb on - strand, within rihB at 5271.289 kb on + strand, within rihB at 5271.290 kb on - strand, within rihB at 5271.304 kb on - strand, within rihB at 5271.534 kb on + strand, within rihB at 5271.602 kb on + strand, within rihB at 5271.603 kb on - strand, within rihB at 5271.618 kb on + strand, within rihB at 5271.619 kb on - strand, within rihB at 5271.719 kb on + strand at 5271.725 kb on + strand at 5271.745 kb on + strand at 5271.746 kb on - strand at 5271.769 kb on - strand at 5271.769 kb on - strand at 5271.784 kb on - strand at 5271.793 kb on + strand at 5271.832 kb on - strand at 5271.832 kb on - strand at 5271.940 kb on + strand at 5272.019 kb on + strand, within nupX at 5272.019 kb on + strand, within nupX at 5272.077 kb on - strand, within nupX at 5272.077 kb on - strand, within nupX at 5272.231 kb on - strand, within nupX at 5272.276 kb on + strand, within nupX at 5272.292 kb on - strand, within nupX at 5272.402 kb on + strand, within nupX at 5272.403 kb on - strand, within nupX at 5272.543 kb on + strand, within nupX at 5272.543 kb on + strand, within nupX at 5272.581 kb on - strand, within nupX at 5272.718 kb on + strand, within nupX at 5272.777 kb on + strand, within nupX at 5272.777 kb on + strand, within nupX at 5272.778 kb on - strand, within nupX at 5272.778 kb on - strand, within nupX at 5272.778 kb on - strand, within nupX
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 5,270,594 - yeiL JDDGAC_27425 0.83 +0.3 5,270,746 + +0.4 5,270,895 - -0.4 5,270,983 + rihB JDDGAC_27430 0.15 -0.7 5,271,021 - rihB JDDGAC_27430 0.19 -0.1 5,271,084 - rihB JDDGAC_27430 0.25 -1.2 5,271,162 + rihB JDDGAC_27430 0.34 -0.3 5,271,248 + rihB JDDGAC_27430 0.43 +0.5 5,271,249 - rihB JDDGAC_27430 0.43 -2.3 5,271,289 + rihB JDDGAC_27430 0.47 -1.9 5,271,290 - rihB JDDGAC_27430 0.47 -0.3 5,271,304 - rihB JDDGAC_27430 0.49 +2.0 5,271,534 + rihB JDDGAC_27430 0.73 -0.6 5,271,602 + rihB JDDGAC_27430 0.80 +0.3 5,271,603 - rihB JDDGAC_27430 0.81 +0.2 5,271,618 + rihB JDDGAC_27430 0.82 -3.0 5,271,619 - rihB JDDGAC_27430 0.82 +1.6 5,271,719 + +2.3 5,271,725 + -0.4 5,271,745 + +0.1 5,271,746 - -1.3 5,271,769 - +0.8 5,271,769 - -3.2 5,271,784 - -1.2 5,271,793 + -1.0 5,271,832 - +0.6 5,271,832 - -2.7 5,271,940 + -1.0 5,272,019 + nupX JDDGAC_27435 0.11 -1.8 5,272,019 + nupX JDDGAC_27435 0.11 -0.8 5,272,077 - nupX JDDGAC_27435 0.15 -0.5 5,272,077 - nupX JDDGAC_27435 0.15 +0.6 5,272,231 - nupX JDDGAC_27435 0.28 +0.7 5,272,276 + nupX JDDGAC_27435 0.31 -0.8 5,272,292 - nupX JDDGAC_27435 0.33 -0.1 5,272,402 + nupX JDDGAC_27435 0.41 +0.2 5,272,403 - nupX JDDGAC_27435 0.41 -1.7 5,272,543 + nupX JDDGAC_27435 0.53 +0.1 5,272,543 + nupX JDDGAC_27435 0.53 -0.3 5,272,581 - nupX JDDGAC_27435 0.56 +1.5 5,272,718 + nupX JDDGAC_27435 0.67 +0.5 5,272,777 + nupX JDDGAC_27435 0.71 +0.1 5,272,777 + nupX JDDGAC_27435 0.71 -1.0 5,272,778 - nupX JDDGAC_27435 0.71 -2.8 5,272,778 - nupX JDDGAC_27435 0.71 +0.1 5,272,778 - nupX JDDGAC_27435 0.71 +1.1
Or see this region's nucleotide sequence