Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcyD and tcyL are separated by 14 nucleotides tcyL and yecC overlap by 4 nucleotides yecC and sdiA are separated by 229 nucleotides
JDDGAC_00385: dcyD - D-cysteine desulfhydrase, at 67,485 to 68,471
dcyD
JDDGAC_00390: tcyL - cystine ABC transporter permease, at 68,486 to 69,154
tcyL
JDDGAC_00395: yecC - L-cystine ABC transporter ATP-binding protein YecC, at 69,151 to 69,903
yecC
JDDGAC_00400: sdiA - transcriptional regulator SdiA, at 70,133 to 70,855
sdiA
Position (kb) 69
70 Strain fitness (log2 ratio) -2
-1
0
1
2 at 68.497 kb on + strand at 68.499 kb on + strand at 68.499 kb on + strand at 68.499 kb on + strand at 68.546 kb on + strand at 68.709 kb on - strand, within tcyL at 68.789 kb on + strand, within tcyL at 68.825 kb on - strand, within tcyL at 68.863 kb on + strand, within tcyL at 68.882 kb on - strand, within tcyL at 68.962 kb on + strand, within tcyL at 69.028 kb on + strand, within tcyL at 69.039 kb on + strand, within tcyL at 69.050 kb on + strand, within tcyL at 69.051 kb on - strand, within tcyL at 69.051 kb on - strand, within tcyL at 69.051 kb on - strand, within tcyL at 69.051 kb on - strand, within tcyL at 69.176 kb on + strand at 69.227 kb on + strand, within yecC at 69.227 kb on + strand, within yecC at 69.287 kb on + strand, within yecC at 69.287 kb on + strand, within yecC at 69.288 kb on - strand, within yecC at 69.368 kb on + strand, within yecC at 69.468 kb on + strand, within yecC at 69.843 kb on - strand at 69.843 kb on - strand at 69.901 kb on + strand at 69.905 kb on - strand at 70.050 kb on - strand at 70.071 kb on + strand at 70.072 kb on - strand at 70.089 kb on - strand at 70.129 kb on + strand at 70.263 kb on + strand, within sdiA at 70.263 kb on + strand, within sdiA at 70.263 kb on + strand, within sdiA at 70.297 kb on + strand, within sdiA at 70.341 kb on - strand, within sdiA at 70.343 kb on + strand, within sdiA at 70.396 kb on + strand, within sdiA at 70.410 kb on + strand, within sdiA at 70.410 kb on + strand, within sdiA at 70.410 kb on + strand, within sdiA at 70.428 kb on + strand, within sdiA at 70.500 kb on + strand, within sdiA at 70.500 kb on + strand, within sdiA at 70.635 kb on + strand, within sdiA at 70.647 kb on + strand, within sdiA at 70.798 kb on + strand at 70.811 kb on - strand at 70.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 68,497 + -1.3 68,499 + -1.2 68,499 + -0.6 68,499 + -1.0 68,546 + -2.6 68,709 - tcyL JDDGAC_00390 0.33 -2.2 68,789 + tcyL JDDGAC_00390 0.45 +0.8 68,825 - tcyL JDDGAC_00390 0.51 -0.3 68,863 + tcyL JDDGAC_00390 0.56 -0.4 68,882 - tcyL JDDGAC_00390 0.59 -0.8 68,962 + tcyL JDDGAC_00390 0.71 +0.6 69,028 + tcyL JDDGAC_00390 0.81 -2.6 69,039 + tcyL JDDGAC_00390 0.83 +1.7 69,050 + tcyL JDDGAC_00390 0.84 +1.0 69,051 - tcyL JDDGAC_00390 0.84 +0.3 69,051 - tcyL JDDGAC_00390 0.84 +1.1 69,051 - tcyL JDDGAC_00390 0.84 -1.8 69,051 - tcyL JDDGAC_00390 0.84 -2.0 69,176 + -0.4 69,227 + yecC JDDGAC_00395 0.10 +1.5 69,227 + yecC JDDGAC_00395 0.10 +0.0 69,287 + yecC JDDGAC_00395 0.18 +0.6 69,287 + yecC JDDGAC_00395 0.18 +0.0 69,288 - yecC JDDGAC_00395 0.18 +2.0 69,368 + yecC JDDGAC_00395 0.29 +1.2 69,468 + yecC JDDGAC_00395 0.42 -1.7 69,843 - -1.6 69,843 - +2.2 69,901 + -2.0 69,905 - -2.3 70,050 - +2.7 70,071 + -1.0 70,072 - -0.4 70,089 - +0.6 70,129 + -0.2 70,263 + sdiA JDDGAC_00400 0.18 -0.5 70,263 + sdiA JDDGAC_00400 0.18 -0.2 70,263 + sdiA JDDGAC_00400 0.18 +1.7 70,297 + sdiA JDDGAC_00400 0.23 -0.0 70,341 - sdiA JDDGAC_00400 0.29 +0.2 70,343 + sdiA JDDGAC_00400 0.29 -0.1 70,396 + sdiA JDDGAC_00400 0.36 -0.3 70,410 + sdiA JDDGAC_00400 0.38 -0.1 70,410 + sdiA JDDGAC_00400 0.38 +0.1 70,410 + sdiA JDDGAC_00400 0.38 -1.3 70,428 + sdiA JDDGAC_00400 0.41 -1.4 70,500 + sdiA JDDGAC_00400 0.51 -0.4 70,500 + sdiA JDDGAC_00400 0.51 -1.0 70,635 + sdiA JDDGAC_00400 0.69 -0.2 70,647 + sdiA JDDGAC_00400 0.71 -0.3 70,798 + -0.3 70,811 - -0.3 70,830 - +0.3
Or see this region's nucleotide sequence