Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recC and ptrA are separated by 175 nucleotides ptrA and recB overlap by 8 nucleotides
JDDGAC_23705: recC - exodeoxyribonuclease V subunit gamma, at 4,535,601 to 4,538,969
recC
JDDGAC_23710: ptrA - pitrilysin, at 4,539,145 to 4,542,033
ptrA
JDDGAC_23715: recB - exodeoxyribonuclease V subunit beta, at 4,542,026 to 4,545,568
recB
Position (kb) 4539
4540
4541
4542
4543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4538.958 kb on - strand at 4539.038 kb on - strand at 4539.038 kb on - strand at 4539.038 kb on - strand at 4539.039 kb on + strand at 4539.039 kb on + strand at 4539.039 kb on + strand at 4539.039 kb on + strand at 4539.040 kb on - strand at 4539.040 kb on - strand at 4539.040 kb on - strand at 4539.040 kb on - strand at 4539.040 kb on - strand at 4539.040 kb on - strand at 4539.040 kb on - strand at 4539.041 kb on + strand at 4539.041 kb on + strand at 4539.041 kb on + strand at 4539.041 kb on + strand at 4539.042 kb on - strand at 4539.042 kb on - strand at 4539.047 kb on + strand at 4539.048 kb on - strand at 4539.072 kb on + strand at 4539.173 kb on + strand at 4539.173 kb on + strand at 4539.174 kb on - strand at 4539.174 kb on - strand at 4539.174 kb on - strand at 4539.182 kb on + strand at 4539.183 kb on - strand at 4539.183 kb on - strand at 4539.183 kb on - strand at 4539.183 kb on - strand at 4539.203 kb on + strand at 4539.250 kb on - strand at 4539.275 kb on - strand at 4539.283 kb on - strand at 4539.283 kb on - strand at 4539.285 kb on - strand at 4539.409 kb on + strand at 4539.409 kb on + strand at 4539.420 kb on + strand at 4539.420 kb on + strand at 4539.420 kb on + strand at 4539.421 kb on - strand at 4539.472 kb on + strand, within ptrA at 4539.617 kb on - strand, within ptrA at 4539.633 kb on + strand, within ptrA at 4539.633 kb on + strand, within ptrA at 4539.634 kb on - strand, within ptrA at 4539.654 kb on - strand, within ptrA at 4539.846 kb on + strand, within ptrA at 4539.856 kb on - strand, within ptrA at 4539.859 kb on - strand, within ptrA at 4539.951 kb on - strand, within ptrA at 4539.985 kb on + strand, within ptrA at 4540.005 kb on + strand, within ptrA at 4540.081 kb on + strand, within ptrA at 4540.081 kb on + strand, within ptrA at 4540.081 kb on + strand, within ptrA at 4540.107 kb on + strand, within ptrA at 4540.107 kb on + strand, within ptrA at 4540.108 kb on - strand, within ptrA at 4540.108 kb on - strand, within ptrA at 4540.139 kb on + strand, within ptrA at 4540.139 kb on + strand, within ptrA at 4540.140 kb on - strand, within ptrA at 4540.171 kb on - strand, within ptrA at 4540.193 kb on + strand, within ptrA at 4540.193 kb on + strand, within ptrA at 4540.267 kb on + strand, within ptrA at 4540.268 kb on - strand, within ptrA at 4540.268 kb on - strand, within ptrA at 4540.268 kb on - strand, within ptrA at 4540.280 kb on + strand, within ptrA at 4540.369 kb on - strand, within ptrA at 4540.375 kb on + strand, within ptrA at 4540.395 kb on + strand, within ptrA at 4540.395 kb on + strand, within ptrA at 4540.422 kb on + strand, within ptrA at 4540.422 kb on + strand, within ptrA at 4540.422 kb on + strand, within ptrA at 4540.423 kb on - strand, within ptrA at 4540.440 kb on + strand, within ptrA at 4540.462 kb on - strand, within ptrA at 4540.517 kb on - strand, within ptrA at 4540.518 kb on + strand, within ptrA at 4540.552 kb on + strand, within ptrA at 4540.553 kb on - strand, within ptrA at 4540.660 kb on + strand, within ptrA at 4540.660 kb on + strand, within ptrA at 4540.663 kb on - strand, within ptrA at 4540.687 kb on - strand, within ptrA at 4540.702 kb on + strand, within ptrA at 4540.702 kb on + strand, within ptrA at 4540.703 kb on - strand, within ptrA at 4540.865 kb on - strand, within ptrA at 4540.892 kb on + strand, within ptrA at 4540.893 kb on - strand, within ptrA at 4540.939 kb on - strand, within ptrA at 4540.950 kb on + strand, within ptrA at 4541.019 kb on + strand, within ptrA at 4541.019 kb on + strand, within ptrA at 4541.019 kb on + strand, within ptrA at 4541.019 kb on + strand, within ptrA at 4541.020 kb on - strand, within ptrA at 4541.020 kb on - strand, within ptrA at 4541.020 kb on - strand, within ptrA at 4541.020 kb on - strand, within ptrA at 4541.024 kb on - strand, within ptrA at 4541.026 kb on - strand, within ptrA at 4541.066 kb on - strand, within ptrA at 4541.119 kb on - strand, within ptrA at 4541.119 kb on - strand, within ptrA at 4541.354 kb on + strand, within ptrA at 4541.354 kb on + strand, within ptrA at 4541.355 kb on - strand, within ptrA at 4541.355 kb on - strand, within ptrA at 4541.398 kb on - strand, within ptrA at 4541.452 kb on + strand, within ptrA at 4541.453 kb on - strand, within ptrA at 4541.467 kb on + strand, within ptrA at 4541.467 kb on + strand, within ptrA at 4541.467 kb on + strand, within ptrA at 4541.468 kb on - strand, within ptrA at 4541.468 kb on - strand, within ptrA at 4541.469 kb on + strand, within ptrA at 4541.469 kb on + strand, within ptrA at 4541.470 kb on - strand, within ptrA at 4541.470 kb on - strand, within ptrA at 4541.470 kb on - strand, within ptrA at 4541.470 kb on - strand, within ptrA at 4541.470 kb on - strand, within ptrA at 4541.470 kb on - strand, within ptrA at 4541.470 kb on - strand, within ptrA at 4541.470 kb on - strand, within ptrA at 4541.470 kb on - strand, within ptrA at 4541.638 kb on + strand, within ptrA at 4541.638 kb on + strand, within ptrA at 4541.639 kb on - strand, within ptrA at 4541.721 kb on + strand, within ptrA at 4541.722 kb on - strand, within ptrA at 4541.771 kb on + strand at 4541.772 kb on - strand at 4541.775 kb on + strand at 4541.797 kb on - strand at 4541.834 kb on + strand at 4541.834 kb on + strand at 4541.947 kb on + strand at 4541.948 kb on - strand at 4542.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,538,958 - -2.8 4,539,038 - -0.3 4,539,038 - +0.3 4,539,038 - +0.2 4,539,039 + +1.0 4,539,039 + -0.4 4,539,039 + -1.1 4,539,039 + +0.7 4,539,040 - -0.3 4,539,040 - +1.6 4,539,040 - +0.0 4,539,040 - -2.5 4,539,040 - -0.4 4,539,040 - +1.5 4,539,040 - +0.5 4,539,041 + -0.3 4,539,041 + +0.5 4,539,041 + +0.8 4,539,041 + +1.1 4,539,042 - +0.4 4,539,042 - -1.7 4,539,047 + -0.3 4,539,048 - -0.9 4,539,072 + +0.3 4,539,173 + +1.6 4,539,173 + -1.4 4,539,174 - -0.2 4,539,174 - -2.2 4,539,174 - +0.2 4,539,182 + -0.2 4,539,183 - -0.4 4,539,183 - -0.1 4,539,183 - +0.5 4,539,183 - -0.5 4,539,203 + +1.1 4,539,250 - -0.2 4,539,275 - +0.2 4,539,283 - -0.3 4,539,283 - +0.3 4,539,285 - +0.1 4,539,409 + +1.4 4,539,409 + -0.1 4,539,420 + -0.3 4,539,420 + +1.8 4,539,420 + +1.3 4,539,421 - -0.9 4,539,472 + ptrA JDDGAC_23710 0.11 +1.3 4,539,617 - ptrA JDDGAC_23710 0.16 -0.7 4,539,633 + ptrA JDDGAC_23710 0.17 -0.2 4,539,633 + ptrA JDDGAC_23710 0.17 -2.1 4,539,634 - ptrA JDDGAC_23710 0.17 +0.9 4,539,654 - ptrA JDDGAC_23710 0.18 -0.2 4,539,846 + ptrA JDDGAC_23710 0.24 -0.1 4,539,856 - ptrA JDDGAC_23710 0.25 -0.6 4,539,859 - ptrA JDDGAC_23710 0.25 -0.6 4,539,951 - ptrA JDDGAC_23710 0.28 +1.4 4,539,985 + ptrA JDDGAC_23710 0.29 -0.1 4,540,005 + ptrA JDDGAC_23710 0.30 +0.8 4,540,081 + ptrA JDDGAC_23710 0.32 +0.5 4,540,081 + ptrA JDDGAC_23710 0.32 +0.3 4,540,081 + ptrA JDDGAC_23710 0.32 -1.5 4,540,107 + ptrA JDDGAC_23710 0.33 +1.2 4,540,107 + ptrA JDDGAC_23710 0.33 +1.1 4,540,108 - ptrA JDDGAC_23710 0.33 -1.2 4,540,108 - ptrA JDDGAC_23710 0.33 +0.6 4,540,139 + ptrA JDDGAC_23710 0.34 -0.4 4,540,139 + ptrA JDDGAC_23710 0.34 +1.1 4,540,140 - ptrA JDDGAC_23710 0.34 -1.7 4,540,171 - ptrA JDDGAC_23710 0.36 -0.8 4,540,193 + ptrA JDDGAC_23710 0.36 -0.1 4,540,193 + ptrA JDDGAC_23710 0.36 +0.5 4,540,267 + ptrA JDDGAC_23710 0.39 +0.3 4,540,268 - ptrA JDDGAC_23710 0.39 +0.0 4,540,268 - ptrA JDDGAC_23710 0.39 +0.4 4,540,268 - ptrA JDDGAC_23710 0.39 +0.2 4,540,280 + ptrA JDDGAC_23710 0.39 -0.2 4,540,369 - ptrA JDDGAC_23710 0.42 +2.7 4,540,375 + ptrA JDDGAC_23710 0.43 -0.3 4,540,395 + ptrA JDDGAC_23710 0.43 -1.5 4,540,395 + ptrA JDDGAC_23710 0.43 -0.6 4,540,422 + ptrA JDDGAC_23710 0.44 -0.4 4,540,422 + ptrA JDDGAC_23710 0.44 -0.2 4,540,422 + ptrA JDDGAC_23710 0.44 +0.8 4,540,423 - ptrA JDDGAC_23710 0.44 -0.1 4,540,440 + ptrA JDDGAC_23710 0.45 -0.4 4,540,462 - ptrA JDDGAC_23710 0.46 +0.2 4,540,517 - ptrA JDDGAC_23710 0.47 +0.1 4,540,518 + ptrA JDDGAC_23710 0.48 +1.4 4,540,552 + ptrA JDDGAC_23710 0.49 +0.9 4,540,553 - ptrA JDDGAC_23710 0.49 +0.1 4,540,660 + ptrA JDDGAC_23710 0.52 -1.6 4,540,660 + ptrA JDDGAC_23710 0.52 +0.6 4,540,663 - ptrA JDDGAC_23710 0.53 -3.5 4,540,687 - ptrA JDDGAC_23710 0.53 +1.6 4,540,702 + ptrA JDDGAC_23710 0.54 +0.8 4,540,702 + ptrA JDDGAC_23710 0.54 -1.3 4,540,703 - ptrA JDDGAC_23710 0.54 -0.9 4,540,865 - ptrA JDDGAC_23710 0.60 -0.4 4,540,892 + ptrA JDDGAC_23710 0.60 -0.2 4,540,893 - ptrA JDDGAC_23710 0.61 -0.4 4,540,939 - ptrA JDDGAC_23710 0.62 +1.7 4,540,950 + ptrA JDDGAC_23710 0.62 +1.8 4,541,019 + ptrA JDDGAC_23710 0.65 -1.2 4,541,019 + ptrA JDDGAC_23710 0.65 +0.8 4,541,019 + ptrA JDDGAC_23710 0.65 -0.9 4,541,019 + ptrA JDDGAC_23710 0.65 -1.0 4,541,020 - ptrA JDDGAC_23710 0.65 +0.8 4,541,020 - ptrA JDDGAC_23710 0.65 +0.7 4,541,020 - ptrA JDDGAC_23710 0.65 -1.9 4,541,020 - ptrA JDDGAC_23710 0.65 +0.4 4,541,024 - ptrA JDDGAC_23710 0.65 +1.8 4,541,026 - ptrA JDDGAC_23710 0.65 +0.5 4,541,066 - ptrA JDDGAC_23710 0.66 -0.4 4,541,119 - ptrA JDDGAC_23710 0.68 +0.5 4,541,119 - ptrA JDDGAC_23710 0.68 -0.7 4,541,354 + ptrA JDDGAC_23710 0.76 -1.3 4,541,354 + ptrA JDDGAC_23710 0.76 -2.0 4,541,355 - ptrA JDDGAC_23710 0.76 -1.0 4,541,355 - ptrA JDDGAC_23710 0.76 +0.5 4,541,398 - ptrA JDDGAC_23710 0.78 -0.2 4,541,452 + ptrA JDDGAC_23710 0.80 -0.2 4,541,453 - ptrA JDDGAC_23710 0.80 -1.6 4,541,467 + ptrA JDDGAC_23710 0.80 +0.5 4,541,467 + ptrA JDDGAC_23710 0.80 -0.3 4,541,467 + ptrA JDDGAC_23710 0.80 +0.8 4,541,468 - ptrA JDDGAC_23710 0.80 +0.3 4,541,468 - ptrA JDDGAC_23710 0.80 +0.7 4,541,469 + ptrA JDDGAC_23710 0.80 -0.7 4,541,469 + ptrA JDDGAC_23710 0.80 +1.0 4,541,470 - ptrA JDDGAC_23710 0.80 +2.1 4,541,470 - ptrA JDDGAC_23710 0.80 -0.9 4,541,470 - ptrA JDDGAC_23710 0.80 +1.4 4,541,470 - ptrA JDDGAC_23710 0.80 -0.6 4,541,470 - ptrA JDDGAC_23710 0.80 -1.3 4,541,470 - ptrA JDDGAC_23710 0.80 +0.1 4,541,470 - ptrA JDDGAC_23710 0.80 -0.3 4,541,470 - ptrA JDDGAC_23710 0.80 +1.9 4,541,470 - ptrA JDDGAC_23710 0.80 +1.8 4,541,638 + ptrA JDDGAC_23710 0.86 -0.6 4,541,638 + ptrA JDDGAC_23710 0.86 +0.0 4,541,639 - ptrA JDDGAC_23710 0.86 -0.8 4,541,721 + ptrA JDDGAC_23710 0.89 +0.8 4,541,722 - ptrA JDDGAC_23710 0.89 +1.9 4,541,771 + -0.0 4,541,772 - -0.1 4,541,775 + +0.7 4,541,797 - +0.0 4,541,834 + -0.0 4,541,834 + +0.5 4,541,947 + +0.5 4,541,948 - -0.2 4,542,048 + -1.8
Or see this region's nucleotide sequence