Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28935 and JDDGAC_28940 are separated by 136 nucleotides JDDGAC_28940 and JDDGAC_28945 are separated by 40 nucleotides JDDGAC_28945 and JDDGAC_28950 are separated by 76 nucleotides JDDGAC_28950 and rrrD overlap by 1 nucleotides rrrD and JDDGAC_28960 overlap by 4 nucleotides JDDGAC_28960 and JDDGAC_28965 are separated by 202 nucleotides
JDDGAC_28935: JDDGAC_28935 - sialate O-acetylesterase, at 5,527,628 to 5,529,565
_28935
JDDGAC_28940: JDDGAC_28940 - DUF1378 domain-containing protein, at 5,529,702 to 5,529,881
_28940
JDDGAC_28945: JDDGAC_28945 - DUF826 domain-containing protein, at 5,529,922 to 5,530,194
_28945
JDDGAC_28950: JDDGAC_28950 - holin, at 5,530,271 to 5,530,486
_28950
JDDGAC_28955: rrrD - lysozyme RrrD, at 5,530,486 to 5,530,983
rrrD
JDDGAC_28960: JDDGAC_28960 - lysis protein, at 5,530,980 to 5,531,417
_28960
JDDGAC_28965: JDDGAC_28965 - DNA-binding protein, at 5,531,620 to 5,532,117
_28965
Position (kb) 5530
5531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5530.193 kb on - strand at 5530.459 kb on + strand, within JDDGAC_28950 at 5530.484 kb on + strand at 5530.522 kb on - strand at 5530.600 kb on + strand, within rrrD at 5530.600 kb on + strand, within rrrD at 5530.600 kb on + strand, within rrrD at 5530.601 kb on - strand, within rrrD at 5530.610 kb on - strand, within rrrD at 5531.015 kb on + strand at 5531.117 kb on + strand, within JDDGAC_28960 at 5531.184 kb on - strand, within JDDGAC_28960 at 5531.310 kb on - strand, within JDDGAC_28960 at 5531.331 kb on + strand, within JDDGAC_28960 at 5531.331 kb on + strand, within JDDGAC_28960 at 5531.376 kb on - strand at 5531.379 kb on + strand at 5531.380 kb on - strand at 5531.445 kb on + strand at 5531.446 kb on - strand at 5531.477 kb on + strand at 5531.549 kb on + strand at 5531.549 kb on + strand at 5531.608 kb on + strand at 5531.631 kb on - strand at 5531.688 kb on + strand, within JDDGAC_28965 at 5531.830 kb on + strand, within JDDGAC_28965 at 5531.851 kb on + strand, within JDDGAC_28965 at 5531.851 kb on + strand, within JDDGAC_28965 at 5531.852 kb on - strand, within JDDGAC_28965 at 5531.887 kb on + strand, within JDDGAC_28965 at 5531.887 kb on + strand, within JDDGAC_28965 at 5531.887 kb on + strand, within JDDGAC_28965 at 5531.888 kb on - strand, within JDDGAC_28965 at 5531.896 kb on + strand, within JDDGAC_28965 at 5531.897 kb on - strand, within JDDGAC_28965 at 5531.915 kb on - strand, within JDDGAC_28965 at 5531.915 kb on - strand, within JDDGAC_28965 at 5531.948 kb on + strand, within JDDGAC_28965 at 5531.948 kb on + strand, within JDDGAC_28965 at 5531.949 kb on - strand, within JDDGAC_28965
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 5,530,193 - -0.5 5,530,459 + JDDGAC_28950 0.87 -0.3 5,530,484 + -0.0 5,530,522 - +0.6 5,530,600 + rrrD JDDGAC_28955 0.23 +0.2 5,530,600 + rrrD JDDGAC_28955 0.23 -1.8 5,530,600 + rrrD JDDGAC_28955 0.23 -2.4 5,530,601 - rrrD JDDGAC_28955 0.23 -1.1 5,530,610 - rrrD JDDGAC_28955 0.25 -0.6 5,531,015 + +3.0 5,531,117 + JDDGAC_28960 0.31 -1.0 5,531,184 - JDDGAC_28960 0.47 -0.3 5,531,310 - JDDGAC_28960 0.75 -2.4 5,531,331 + JDDGAC_28960 0.80 -0.6 5,531,331 + JDDGAC_28960 0.80 -1.5 5,531,376 - +1.7 5,531,379 + -3.2 5,531,380 - -1.0 5,531,445 + +0.5 5,531,446 - -1.8 5,531,477 + -0.1 5,531,549 + -0.9 5,531,549 + -1.9 5,531,608 + -1.6 5,531,631 - -0.9 5,531,688 + JDDGAC_28965 0.14 -0.2 5,531,830 + JDDGAC_28965 0.42 -0.5 5,531,851 + JDDGAC_28965 0.46 -1.6 5,531,851 + JDDGAC_28965 0.46 -0.4 5,531,852 - JDDGAC_28965 0.47 +0.1 5,531,887 + JDDGAC_28965 0.54 -1.4 5,531,887 + JDDGAC_28965 0.54 -0.7 5,531,887 + JDDGAC_28965 0.54 -0.4 5,531,888 - JDDGAC_28965 0.54 +1.0 5,531,896 + JDDGAC_28965 0.55 +0.0 5,531,897 - JDDGAC_28965 0.56 -0.3 5,531,915 - JDDGAC_28965 0.59 +2.6 5,531,915 - JDDGAC_28965 0.59 -1.0 5,531,948 + JDDGAC_28965 0.66 -0.3 5,531,948 + JDDGAC_28965 0.66 -1.9 5,531,949 - JDDGAC_28965 0.66 -3.4
Or see this region's nucleotide sequence