Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28820 and JDDGAC_28825 overlap by 4 nucleotides JDDGAC_28825 and JDDGAC_28830 overlap by 23 nucleotides JDDGAC_28830 and JDDGAC_28835 are separated by 246 nucleotides JDDGAC_28835 and JDDGAC_28840 are separated by 1 nucleotides JDDGAC_28840 and JDDGAC_28845 are separated by 132 nucleotides
JDDGAC_28820: JDDGAC_28820 - replicative DNA helicase, at 5,516,723 to 5,518,099
_28820
JDDGAC_28825: JDDGAC_28825 - hypothetical protein, at 5,518,096 to 5,518,200
_28825
JDDGAC_28830: JDDGAC_28830 - Endonuclease, at 5,518,178 to 5,518,789
_28830
JDDGAC_28835: JDDGAC_28835 - hypothetical protein, at 5,519,036 to 5,519,251
_28835
JDDGAC_28840: JDDGAC_28840 - hypothetical protein, at 5,519,253 to 5,519,585
_28840
JDDGAC_28845: JDDGAC_28845 - hypothetical protein, at 5,519,718 to 5,519,933
_28845
Position (kb) 5518
5519 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5517.561 kb on + strand, within JDDGAC_28820 at 5517.561 kb on + strand, within JDDGAC_28820 at 5517.561 kb on + strand, within JDDGAC_28820 at 5517.561 kb on + strand, within JDDGAC_28820 at 5517.562 kb on - strand, within JDDGAC_28820 at 5517.562 kb on - strand, within JDDGAC_28820 at 5517.622 kb on + strand, within JDDGAC_28820 at 5517.623 kb on - strand, within JDDGAC_28820 at 5517.662 kb on + strand, within JDDGAC_28820 at 5517.663 kb on - strand, within JDDGAC_28820 at 5517.766 kb on + strand, within JDDGAC_28820 at 5517.767 kb on - strand, within JDDGAC_28820 at 5517.898 kb on - strand, within JDDGAC_28820 at 5517.898 kb on - strand, within JDDGAC_28820 at 5517.899 kb on + strand, within JDDGAC_28820 at 5517.900 kb on - strand, within JDDGAC_28820 at 5517.900 kb on - strand, within JDDGAC_28820 at 5517.914 kb on - strand, within JDDGAC_28820 at 5517.971 kb on - strand at 5518.095 kb on + strand at 5518.106 kb on - strand at 5518.119 kb on - strand, within JDDGAC_28825 at 5518.121 kb on + strand, within JDDGAC_28825 at 5518.140 kb on - strand, within JDDGAC_28825 at 5518.159 kb on - strand, within JDDGAC_28825 at 5518.319 kb on + strand, within JDDGAC_28830 at 5518.322 kb on - strand, within JDDGAC_28830 at 5518.381 kb on - strand, within JDDGAC_28830 at 5518.579 kb on + strand, within JDDGAC_28830 at 5518.656 kb on - strand, within JDDGAC_28830 at 5518.672 kb on + strand, within JDDGAC_28830 at 5518.881 kb on + strand at 5518.882 kb on - strand at 5518.946 kb on + strand at 5518.996 kb on + strand at 5519.019 kb on - strand at 5519.036 kb on - strand at 5519.056 kb on + strand at 5519.093 kb on - strand, within JDDGAC_28835 at 5519.095 kb on + strand, within JDDGAC_28835 at 5519.095 kb on + strand, within JDDGAC_28835 at 5519.096 kb on - strand, within JDDGAC_28835 at 5519.099 kb on + strand, within JDDGAC_28835 at 5519.342 kb on + strand, within JDDGAC_28840 at 5519.342 kb on + strand, within JDDGAC_28840 at 5519.343 kb on - strand, within JDDGAC_28840 at 5519.346 kb on + strand, within JDDGAC_28840 at 5519.346 kb on + strand, within JDDGAC_28840 at 5519.346 kb on + strand, within JDDGAC_28840 at 5519.383 kb on + strand, within JDDGAC_28840 at 5519.384 kb on - strand, within JDDGAC_28840 at 5519.424 kb on - strand, within JDDGAC_28840 at 5519.528 kb on - strand, within JDDGAC_28840 at 5519.728 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 5,517,561 + JDDGAC_28820 0.61 +1.2 5,517,561 + JDDGAC_28820 0.61 -0.2 5,517,561 + JDDGAC_28820 0.61 +0.0 5,517,561 + JDDGAC_28820 0.61 +1.0 5,517,562 - JDDGAC_28820 0.61 -0.2 5,517,562 - JDDGAC_28820 0.61 +0.6 5,517,622 + JDDGAC_28820 0.65 +0.4 5,517,623 - JDDGAC_28820 0.65 +0.2 5,517,662 + JDDGAC_28820 0.68 +1.6 5,517,663 - JDDGAC_28820 0.68 -1.0 5,517,766 + JDDGAC_28820 0.76 -2.0 5,517,767 - JDDGAC_28820 0.76 +0.2 5,517,898 - JDDGAC_28820 0.85 +1.4 5,517,898 - JDDGAC_28820 0.85 +0.7 5,517,899 + JDDGAC_28820 0.85 -0.3 5,517,900 - JDDGAC_28820 0.85 -0.2 5,517,900 - JDDGAC_28820 0.85 -1.1 5,517,914 - JDDGAC_28820 0.86 -0.4 5,517,971 - -0.5 5,518,095 + +0.2 5,518,106 - +1.3 5,518,119 - JDDGAC_28825 0.22 +0.5 5,518,121 + JDDGAC_28825 0.24 -1.8 5,518,140 - JDDGAC_28825 0.42 +0.5 5,518,159 - JDDGAC_28825 0.60 -0.5 5,518,319 + JDDGAC_28830 0.23 -2.0 5,518,322 - JDDGAC_28830 0.24 +0.0 5,518,381 - JDDGAC_28830 0.33 -1.2 5,518,579 + JDDGAC_28830 0.66 -0.5 5,518,656 - JDDGAC_28830 0.78 -0.1 5,518,672 + JDDGAC_28830 0.81 -2.1 5,518,881 + +1.1 5,518,882 - -0.2 5,518,946 + -0.1 5,518,996 + -2.0 5,519,019 - +0.7 5,519,036 - +0.5 5,519,056 + +0.8 5,519,093 - JDDGAC_28835 0.26 -0.5 5,519,095 + JDDGAC_28835 0.27 +0.7 5,519,095 + JDDGAC_28835 0.27 +0.1 5,519,096 - JDDGAC_28835 0.28 +1.4 5,519,099 + JDDGAC_28835 0.29 +1.8 5,519,342 + JDDGAC_28840 0.27 -0.9 5,519,342 + JDDGAC_28840 0.27 -0.4 5,519,343 - JDDGAC_28840 0.27 -0.2 5,519,346 + JDDGAC_28840 0.28 -0.8 5,519,346 + JDDGAC_28840 0.28 +1.7 5,519,346 + JDDGAC_28840 0.28 +2.4 5,519,383 + JDDGAC_28840 0.39 +0.4 5,519,384 - JDDGAC_28840 0.39 +1.0 5,519,424 - JDDGAC_28840 0.51 -2.5 5,519,528 - JDDGAC_28840 0.83 +3.0 5,519,728 + +1.4
Or see this region's nucleotide sequence