Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnT and arnD overlap by 1 nucleotides arnD and arnA overlap by 4 nucleotides arnA and arnC overlap by 1 nucleotides arnC and arnB are separated by 3 nucleotides
JDDGAC_26940: arnT - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 5,159,197 to 5,160,849
arnT
JDDGAC_26945: arnD - 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase, at 5,160,849 to 5,161,739
arnD
JDDGAC_26950: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 5,161,736 to 5,163,718
arnA
JDDGAC_26955: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 5,163,718 to 5,164,686
arnC
JDDGAC_26960: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 5,164,690 to 5,165,847
arnB
Position (kb) 5161
5162
5163
5164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5160.798 kb on - strand at 5160.800 kb on + strand at 5160.800 kb on + strand at 5160.800 kb on + strand at 5160.811 kb on - strand at 5160.834 kb on - strand at 5160.839 kb on - strand at 5161.049 kb on + strand, within arnD at 5161.052 kb on - strand, within arnD at 5161.356 kb on - strand, within arnD at 5161.441 kb on + strand, within arnD at 5161.490 kb on + strand, within arnD at 5161.506 kb on - strand, within arnD at 5161.649 kb on + strand, within arnD at 5161.649 kb on + strand, within arnD at 5161.650 kb on - strand, within arnD at 5161.655 kb on + strand at 5161.655 kb on + strand at 5161.722 kb on + strand at 5161.861 kb on + strand at 5161.871 kb on + strand at 5161.903 kb on + strand at 5161.904 kb on - strand at 5161.904 kb on - strand at 5162.159 kb on + strand, within arnA at 5162.182 kb on + strand, within arnA at 5162.216 kb on - strand, within arnA at 5162.312 kb on + strand, within arnA at 5162.313 kb on - strand, within arnA at 5162.313 kb on - strand, within arnA at 5162.348 kb on - strand, within arnA at 5162.391 kb on + strand, within arnA at 5162.391 kb on + strand, within arnA at 5162.396 kb on - strand, within arnA at 5162.402 kb on - strand, within arnA at 5162.524 kb on + strand, within arnA at 5162.524 kb on + strand, within arnA at 5162.525 kb on - strand, within arnA at 5162.526 kb on + strand, within arnA at 5162.527 kb on - strand, within arnA at 5162.587 kb on - strand, within arnA at 5162.587 kb on - strand, within arnA at 5162.608 kb on + strand, within arnA at 5162.609 kb on - strand, within arnA at 5162.609 kb on - strand, within arnA at 5162.698 kb on - strand, within arnA at 5162.860 kb on + strand, within arnA at 5162.860 kb on + strand, within arnA at 5162.860 kb on + strand, within arnA at 5162.861 kb on - strand, within arnA at 5162.861 kb on - strand, within arnA at 5162.861 kb on - strand, within arnA at 5162.861 kb on - strand, within arnA at 5162.861 kb on - strand, within arnA at 5162.863 kb on + strand, within arnA at 5162.863 kb on + strand, within arnA at 5162.864 kb on - strand, within arnA at 5162.864 kb on - strand, within arnA at 5163.018 kb on + strand, within arnA at 5163.019 kb on - strand, within arnA at 5163.019 kb on - strand, within arnA at 5163.019 kb on - strand, within arnA at 5163.019 kb on - strand, within arnA at 5163.019 kb on - strand, within arnA at 5163.056 kb on + strand, within arnA at 5163.056 kb on + strand, within arnA at 5163.057 kb on - strand, within arnA at 5163.167 kb on - strand, within arnA at 5163.170 kb on - strand, within arnA at 5163.241 kb on + strand, within arnA at 5163.242 kb on - strand, within arnA at 5163.242 kb on - strand, within arnA at 5163.244 kb on + strand, within arnA at 5163.244 kb on + strand, within arnA at 5163.472 kb on - strand, within arnA at 5163.594 kb on + strand at 5163.595 kb on - strand at 5163.595 kb on - strand at 5163.697 kb on - strand at 5163.719 kb on + strand at 5163.868 kb on + strand, within arnC at 5163.869 kb on - strand, within arnC at 5163.874 kb on - strand, within arnC at 5163.984 kb on + strand, within arnC at 5164.044 kb on + strand, within arnC at 5164.045 kb on - strand, within arnC at 5164.204 kb on - strand, within arnC at 5164.211 kb on + strand, within arnC at 5164.245 kb on + strand, within arnC at 5164.245 kb on + strand, within arnC at 5164.306 kb on + strand, within arnC at 5164.398 kb on + strand, within arnC at 5164.402 kb on + strand, within arnC at 5164.402 kb on + strand, within arnC at 5164.402 kb on + strand, within arnC at 5164.403 kb on - strand, within arnC at 5164.477 kb on + strand, within arnC at 5164.478 kb on - strand, within arnC at 5164.478 kb on - strand, within arnC at 5164.483 kb on - strand, within arnC at 5164.516 kb on + strand, within arnC at 5164.516 kb on + strand, within arnC at 5164.519 kb on - strand, within arnC at 5164.566 kb on - strand, within arnC at 5164.566 kb on - strand, within arnC at 5164.610 kb on - strand at 5164.618 kb on + strand at 5164.636 kb on - strand at 5164.636 kb on - strand at 5164.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 5,160,798 - -0.5 5,160,800 + -0.1 5,160,800 + -2.0 5,160,800 + -1.0 5,160,811 - -1.2 5,160,834 - -1.3 5,160,839 - +0.0 5,161,049 + arnD JDDGAC_26945 0.22 +0.8 5,161,052 - arnD JDDGAC_26945 0.23 +0.3 5,161,356 - arnD JDDGAC_26945 0.57 -1.0 5,161,441 + arnD JDDGAC_26945 0.66 -2.9 5,161,490 + arnD JDDGAC_26945 0.72 +0.2 5,161,506 - arnD JDDGAC_26945 0.74 -1.5 5,161,649 + arnD JDDGAC_26945 0.90 -2.7 5,161,649 + arnD JDDGAC_26945 0.90 +0.6 5,161,650 - arnD JDDGAC_26945 0.90 -1.3 5,161,655 + -0.5 5,161,655 + -1.1 5,161,722 + +0.8 5,161,861 + +2.1 5,161,871 + +1.2 5,161,903 + +0.9 5,161,904 - +0.1 5,161,904 - +1.6 5,162,159 + arnA JDDGAC_26950 0.21 -1.7 5,162,182 + arnA JDDGAC_26950 0.22 +0.7 5,162,216 - arnA JDDGAC_26950 0.24 -0.5 5,162,312 + arnA JDDGAC_26950 0.29 -0.3 5,162,313 - arnA JDDGAC_26950 0.29 -0.3 5,162,313 - arnA JDDGAC_26950 0.29 +0.9 5,162,348 - arnA JDDGAC_26950 0.31 +0.6 5,162,391 + arnA JDDGAC_26950 0.33 -1.3 5,162,391 + arnA JDDGAC_26950 0.33 -0.5 5,162,396 - arnA JDDGAC_26950 0.33 +0.8 5,162,402 - arnA JDDGAC_26950 0.34 +0.2 5,162,524 + arnA JDDGAC_26950 0.40 -0.2 5,162,524 + arnA JDDGAC_26950 0.40 +0.2 5,162,525 - arnA JDDGAC_26950 0.40 -3.0 5,162,526 + arnA JDDGAC_26950 0.40 -0.7 5,162,527 - arnA JDDGAC_26950 0.40 -0.1 5,162,587 - arnA JDDGAC_26950 0.43 -1.9 5,162,587 - arnA JDDGAC_26950 0.43 +0.7 5,162,608 + arnA JDDGAC_26950 0.44 -0.9 5,162,609 - arnA JDDGAC_26950 0.44 +1.2 5,162,609 - arnA JDDGAC_26950 0.44 -1.9 5,162,698 - arnA JDDGAC_26950 0.49 -1.5 5,162,860 + arnA JDDGAC_26950 0.57 -0.4 5,162,860 + arnA JDDGAC_26950 0.57 -0.6 5,162,860 + arnA JDDGAC_26950 0.57 +0.2 5,162,861 - arnA JDDGAC_26950 0.57 -0.6 5,162,861 - arnA JDDGAC_26950 0.57 -0.5 5,162,861 - arnA JDDGAC_26950 0.57 +0.3 5,162,861 - arnA JDDGAC_26950 0.57 -0.8 5,162,861 - arnA JDDGAC_26950 0.57 -0.6 5,162,863 + arnA JDDGAC_26950 0.57 +1.9 5,162,863 + arnA JDDGAC_26950 0.57 +0.7 5,162,864 - arnA JDDGAC_26950 0.57 -0.4 5,162,864 - arnA JDDGAC_26950 0.57 -0.4 5,163,018 + arnA JDDGAC_26950 0.65 -1.1 5,163,019 - arnA JDDGAC_26950 0.65 +1.3 5,163,019 - arnA JDDGAC_26950 0.65 -2.7 5,163,019 - arnA JDDGAC_26950 0.65 -1.6 5,163,019 - arnA JDDGAC_26950 0.65 +2.2 5,163,019 - arnA JDDGAC_26950 0.65 -1.2 5,163,056 + arnA JDDGAC_26950 0.67 -0.6 5,163,056 + arnA JDDGAC_26950 0.67 -1.8 5,163,057 - arnA JDDGAC_26950 0.67 -3.1 5,163,167 - arnA JDDGAC_26950 0.72 -2.1 5,163,170 - arnA JDDGAC_26950 0.72 -1.2 5,163,241 + arnA JDDGAC_26950 0.76 -2.2 5,163,242 - arnA JDDGAC_26950 0.76 +0.5 5,163,242 - arnA JDDGAC_26950 0.76 +0.7 5,163,244 + arnA JDDGAC_26950 0.76 -0.4 5,163,244 + arnA JDDGAC_26950 0.76 -0.1 5,163,472 - arnA JDDGAC_26950 0.88 -1.3 5,163,594 + -1.2 5,163,595 - -1.0 5,163,595 - +1.6 5,163,697 - +1.7 5,163,719 + -1.0 5,163,868 + arnC JDDGAC_26955 0.15 +1.0 5,163,869 - arnC JDDGAC_26955 0.16 +0.6 5,163,874 - arnC JDDGAC_26955 0.16 +0.4 5,163,984 + arnC JDDGAC_26955 0.27 +1.0 5,164,044 + arnC JDDGAC_26955 0.34 -1.1 5,164,045 - arnC JDDGAC_26955 0.34 -0.4 5,164,204 - arnC JDDGAC_26955 0.50 -0.4 5,164,211 + arnC JDDGAC_26955 0.51 +0.5 5,164,245 + arnC JDDGAC_26955 0.54 +0.2 5,164,245 + arnC JDDGAC_26955 0.54 +0.5 5,164,306 + arnC JDDGAC_26955 0.61 -1.1 5,164,398 + arnC JDDGAC_26955 0.70 -2.1 5,164,402 + arnC JDDGAC_26955 0.71 -3.0 5,164,402 + arnC JDDGAC_26955 0.71 +0.7 5,164,402 + arnC JDDGAC_26955 0.71 +0.3 5,164,403 - arnC JDDGAC_26955 0.71 +1.3 5,164,477 + arnC JDDGAC_26955 0.78 -2.0 5,164,478 - arnC JDDGAC_26955 0.78 -0.9 5,164,478 - arnC JDDGAC_26955 0.78 -0.9 5,164,483 - arnC JDDGAC_26955 0.79 -0.0 5,164,516 + arnC JDDGAC_26955 0.82 -1.3 5,164,516 + arnC JDDGAC_26955 0.82 +0.2 5,164,519 - arnC JDDGAC_26955 0.83 -0.3 5,164,566 - arnC JDDGAC_26955 0.88 -1.3 5,164,566 - arnC JDDGAC_26955 0.88 +0.9 5,164,610 - -1.1 5,164,618 + -1.0 5,164,636 - +0.4 5,164,636 - +0.8 5,164,692 - +0.1
Or see this region's nucleotide sequence