Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt agaB and kbaY are separated by 166 nucleotides kbaY and JDDGAC_21930 are separated by 58 nucleotides JDDGAC_21930 and agaS are separated by 12 nucleotides
JDDGAC_21920: agaB - PTS galactosamine transporter subunit IIB, at 4,191,897 to 4,192,373
agaB
JDDGAC_21925: kbaY - tagatose-bisphosphate aldolase subunit KbaY, at 4,192,540 to 4,193,178
kbaY
JDDGAC_21930: JDDGAC_21930 - D-tagatose-1,6-bisphosphate aldolase subunit KbaY, at 4,193,237 to 4,193,401
_21930
JDDGAC_21935: agaS - D-galactosamine-6-phosphate deaminase AgaS, at 4,193,414 to 4,194,568
agaS
Position (kb) 4193
4194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4192.241 kb on + strand, within agaB at 4192.242 kb on - strand, within agaB at 4192.272 kb on + strand, within agaB at 4192.272 kb on + strand, within agaB at 4192.379 kb on - strand at 4192.737 kb on + strand, within kbaY at 4192.780 kb on + strand, within kbaY at 4192.781 kb on - strand, within kbaY at 4192.781 kb on - strand, within kbaY at 4192.781 kb on - strand, within kbaY at 4192.854 kb on - strand, within kbaY at 4192.855 kb on + strand, within kbaY at 4192.856 kb on - strand, within kbaY at 4192.856 kb on - strand, within kbaY at 4192.921 kb on - strand, within kbaY at 4193.059 kb on + strand, within kbaY at 4193.060 kb on - strand, within kbaY at 4193.060 kb on - strand, within kbaY at 4193.133 kb on + strand at 4193.183 kb on + strand at 4193.183 kb on + strand at 4193.183 kb on + strand at 4193.183 kb on + strand at 4193.183 kb on + strand at 4193.184 kb on - strand at 4193.213 kb on + strand at 4193.214 kb on - strand at 4193.239 kb on - strand at 4193.333 kb on - strand, within JDDGAC_21930 at 4193.333 kb on - strand, within JDDGAC_21930 at 4193.373 kb on - strand, within JDDGAC_21930 at 4193.392 kb on + strand at 4193.392 kb on + strand at 4193.393 kb on - strand at 4193.415 kb on + strand at 4193.439 kb on - strand at 4193.491 kb on + strand at 4193.535 kb on + strand, within agaS at 4193.535 kb on + strand, within agaS at 4193.536 kb on - strand, within agaS at 4193.536 kb on - strand, within agaS at 4193.596 kb on + strand, within agaS at 4193.596 kb on + strand, within agaS at 4193.596 kb on + strand, within agaS at 4193.597 kb on - strand, within agaS at 4193.597 kb on - strand, within agaS at 4193.597 kb on - strand, within agaS at 4193.697 kb on + strand, within agaS at 4193.729 kb on + strand, within agaS at 4193.729 kb on + strand, within agaS at 4193.730 kb on - strand, within agaS at 4193.796 kb on + strand, within agaS at 4193.797 kb on - strand, within agaS at 4194.040 kb on + strand, within agaS at 4194.129 kb on + strand, within agaS at 4194.169 kb on - strand, within agaS at 4194.169 kb on - strand, within agaS at 4194.180 kb on - strand, within agaS at 4194.277 kb on - strand, within agaS at 4194.328 kb on + strand, within agaS at 4194.370 kb on + strand, within agaS at 4194.371 kb on - strand, within agaS
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 4,192,241 + agaB JDDGAC_21920 0.72 +0.5 4,192,242 - agaB JDDGAC_21920 0.72 +0.2 4,192,272 + agaB JDDGAC_21920 0.79 -0.1 4,192,272 + agaB JDDGAC_21920 0.79 +0.4 4,192,379 - -1.8 4,192,737 + kbaY JDDGAC_21925 0.31 +2.0 4,192,780 + kbaY JDDGAC_21925 0.38 +0.8 4,192,781 - kbaY JDDGAC_21925 0.38 +0.6 4,192,781 - kbaY JDDGAC_21925 0.38 -2.2 4,192,781 - kbaY JDDGAC_21925 0.38 -0.3 4,192,854 - kbaY JDDGAC_21925 0.49 +0.5 4,192,855 + kbaY JDDGAC_21925 0.49 -0.1 4,192,856 - kbaY JDDGAC_21925 0.49 +0.2 4,192,856 - kbaY JDDGAC_21925 0.49 -0.9 4,192,921 - kbaY JDDGAC_21925 0.60 +0.8 4,193,059 + kbaY JDDGAC_21925 0.81 -1.5 4,193,060 - kbaY JDDGAC_21925 0.81 -0.2 4,193,060 - kbaY JDDGAC_21925 0.81 -1.1 4,193,133 + -1.1 4,193,183 + -0.2 4,193,183 + -0.2 4,193,183 + +1.5 4,193,183 + -2.1 4,193,183 + +0.2 4,193,184 - -3.4 4,193,213 + +0.2 4,193,214 - -0.2 4,193,239 - +1.8 4,193,333 - JDDGAC_21930 0.58 -0.9 4,193,333 - JDDGAC_21930 0.58 -2.3 4,193,373 - JDDGAC_21930 0.82 -0.9 4,193,392 + +0.0 4,193,392 + -0.7 4,193,393 - -2.2 4,193,415 + -3.2 4,193,439 - -2.3 4,193,491 + +0.2 4,193,535 + agaS JDDGAC_21935 0.10 -0.1 4,193,535 + agaS JDDGAC_21935 0.10 +0.5 4,193,536 - agaS JDDGAC_21935 0.11 -0.9 4,193,536 - agaS JDDGAC_21935 0.11 -0.3 4,193,596 + agaS JDDGAC_21935 0.16 +0.9 4,193,596 + agaS JDDGAC_21935 0.16 -1.0 4,193,596 + agaS JDDGAC_21935 0.16 -1.5 4,193,597 - agaS JDDGAC_21935 0.16 -0.7 4,193,597 - agaS JDDGAC_21935 0.16 +0.9 4,193,597 - agaS JDDGAC_21935 0.16 +1.1 4,193,697 + agaS JDDGAC_21935 0.25 +0.3 4,193,729 + agaS JDDGAC_21935 0.27 -0.8 4,193,729 + agaS JDDGAC_21935 0.27 -1.2 4,193,730 - agaS JDDGAC_21935 0.27 -0.8 4,193,796 + agaS JDDGAC_21935 0.33 +0.6 4,193,797 - agaS JDDGAC_21935 0.33 -1.1 4,194,040 + agaS JDDGAC_21935 0.54 +0.7 4,194,129 + agaS JDDGAC_21935 0.62 +0.4 4,194,169 - agaS JDDGAC_21935 0.65 -1.0 4,194,169 - agaS JDDGAC_21935 0.65 -2.5 4,194,180 - agaS JDDGAC_21935 0.66 -0.7 4,194,277 - agaS JDDGAC_21935 0.75 -2.6 4,194,328 + agaS JDDGAC_21935 0.79 -3.4 4,194,370 + agaS JDDGAC_21935 0.83 +1.3 4,194,371 - agaS JDDGAC_21935 0.83 +0.1
Or see this region's nucleotide sequence