Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08705

Experiment: WM_TP6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_08695 and JDDGAC_08700 are separated by 78 nucleotidesJDDGAC_08700 and JDDGAC_08705 are separated by 206 nucleotidesJDDGAC_08705 and JDDGAC_08710 overlap by 17 nucleotidesJDDGAC_08710 and hipB are separated by 108 nucleotideshipB and JDDGAC_08720 are separated by 27 nucleotides JDDGAC_08695: JDDGAC_08695 - DNA-binding protein, at 1,523,156 to 1,524,247 _08695 JDDGAC_08700: JDDGAC_08700 - hypothetical protein, at 1,524,326 to 1,524,781 _08700 JDDGAC_08705: JDDGAC_08705 - Rha family transcriptional regulator, at 1,524,988 to 1,525,413 _08705 JDDGAC_08710: JDDGAC_08710 - Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT, at 1,525,397 to 1,525,669 _08710 JDDGAC_08715: hipB - XRE family transcriptional regulator, at 1,525,778 to 1,526,179 hipB JDDGAC_08720: JDDGAC_08720 - antitoxin, at 1,526,207 to 1,526,398 _08720 Position (kb) 1524 1525 1526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1524.012 kb on + strand, within JDDGAC_08695at 1524.013 kb on - strand, within JDDGAC_08695at 1524.013 kb on - strand, within JDDGAC_08695at 1524.013 kb on - strand, within JDDGAC_08695at 1524.016 kb on + strand, within JDDGAC_08695at 1524.016 kb on + strand, within JDDGAC_08695at 1524.016 kb on + strand, within JDDGAC_08695at 1524.017 kb on - strand, within JDDGAC_08695at 1524.043 kb on + strand, within JDDGAC_08695at 1524.095 kb on + strand, within JDDGAC_08695at 1524.108 kb on + strand, within JDDGAC_08695at 1524.109 kb on - strand, within JDDGAC_08695at 1524.111 kb on + strand, within JDDGAC_08695at 1524.111 kb on + strand, within JDDGAC_08695at 1524.124 kb on + strand, within JDDGAC_08695at 1524.124 kb on + strand, within JDDGAC_08695at 1524.150 kb on + strandat 1524.187 kb on + strandat 1524.188 kb on - strandat 1524.284 kb on + strandat 1524.285 kb on - strandat 1524.329 kb on + strandat 1524.416 kb on + strand, within JDDGAC_08700at 1524.459 kb on + strand, within JDDGAC_08700at 1524.755 kb on + strandat 1524.779 kb on + strandat 1524.813 kb on + strandat 1524.872 kb on + strandat 1524.978 kb on + strandat 1525.074 kb on + strand, within JDDGAC_08705at 1525.441 kb on + strand, within JDDGAC_08710at 1525.441 kb on + strand, within JDDGAC_08710at 1525.526 kb on + strand, within JDDGAC_08710at 1525.608 kb on + strand, within JDDGAC_08710at 1525.660 kb on + strandat 1525.660 kb on + strandat 1525.689 kb on + strandat 1525.689 kb on + strandat 1526.202 kb on - strandat 1526.340 kb on + strand, within JDDGAC_08720at 1526.340 kb on + strand, within JDDGAC_08720at 1526.383 kb on + strandat 1526.383 kb on + strandat 1526.383 kb on + strandat 1526.396 kb on + strandat 1526.411 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
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1,524,012 + JDDGAC_08695 0.78 -3.3
1,524,013 - JDDGAC_08695 0.78 -0.1
1,524,013 - JDDGAC_08695 0.78 -0.8
1,524,013 - JDDGAC_08695 0.78 +0.0
1,524,016 + JDDGAC_08695 0.79 -0.2
1,524,016 + JDDGAC_08695 0.79 +0.4
1,524,016 + JDDGAC_08695 0.79 +0.5
1,524,017 - JDDGAC_08695 0.79 +1.5
1,524,043 + JDDGAC_08695 0.81 +1.6
1,524,095 + JDDGAC_08695 0.86 +0.4
1,524,108 + JDDGAC_08695 0.87 -1.2
1,524,109 - JDDGAC_08695 0.87 -1.6
1,524,111 + JDDGAC_08695 0.87 -2.2
1,524,111 + JDDGAC_08695 0.87 -0.5
1,524,124 + JDDGAC_08695 0.89 -1.0
1,524,124 + JDDGAC_08695 0.89 +0.8
1,524,150 + -0.8
1,524,187 + -0.1
1,524,188 - -1.2
1,524,284 + -1.3
1,524,285 - -0.5
1,524,329 + -1.2
1,524,416 + JDDGAC_08700 0.20 -0.3
1,524,459 + JDDGAC_08700 0.29 +1.4
1,524,755 + +0.6
1,524,779 + -0.3
1,524,813 + -0.1
1,524,872 + +0.3
1,524,978 + -1.1
1,525,074 + JDDGAC_08705 0.20 -1.6
1,525,441 + JDDGAC_08710 0.16 +0.5
1,525,441 + JDDGAC_08710 0.16 +0.2
1,525,526 + JDDGAC_08710 0.47 +0.1
1,525,608 + JDDGAC_08710 0.77 -0.4
1,525,660 + +0.9
1,525,660 + +1.9
1,525,689 + -0.3
1,525,689 + -1.0
1,526,202 - -0.3
1,526,340 + JDDGAC_08720 0.69 -0.1
1,526,340 + JDDGAC_08720 0.69 -0.3
1,526,383 + +0.9
1,526,383 + -1.6
1,526,383 + -3.2
1,526,396 + +0.6
1,526,411 + -0.6

Or see this region's nucleotide sequence