Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_08695 and JDDGAC_08700 are separated by 78 nucleotides JDDGAC_08700 and JDDGAC_08705 are separated by 206 nucleotides JDDGAC_08705 and JDDGAC_08710 overlap by 17 nucleotides JDDGAC_08710 and hipB are separated by 108 nucleotides hipB and JDDGAC_08720 are separated by 27 nucleotides
JDDGAC_08695: JDDGAC_08695 - DNA-binding protein, at 1,523,156 to 1,524,247
_08695
JDDGAC_08700: JDDGAC_08700 - hypothetical protein, at 1,524,326 to 1,524,781
_08700
JDDGAC_08705: JDDGAC_08705 - Rha family transcriptional regulator, at 1,524,988 to 1,525,413
_08705
JDDGAC_08710: JDDGAC_08710 - Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT, at 1,525,397 to 1,525,669
_08710
JDDGAC_08715: hipB - XRE family transcriptional regulator, at 1,525,778 to 1,526,179
hipB
JDDGAC_08720: JDDGAC_08720 - antitoxin, at 1,526,207 to 1,526,398
_08720
Position (kb)
1524
1525
1526 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1524.012 kb on + strand, within JDDGAC_08695 at 1524.013 kb on - strand, within JDDGAC_08695 at 1524.013 kb on - strand, within JDDGAC_08695 at 1524.013 kb on - strand, within JDDGAC_08695 at 1524.016 kb on + strand, within JDDGAC_08695 at 1524.016 kb on + strand, within JDDGAC_08695 at 1524.016 kb on + strand, within JDDGAC_08695 at 1524.017 kb on - strand, within JDDGAC_08695 at 1524.043 kb on + strand, within JDDGAC_08695 at 1524.095 kb on + strand, within JDDGAC_08695 at 1524.108 kb on + strand, within JDDGAC_08695 at 1524.109 kb on - strand, within JDDGAC_08695 at 1524.111 kb on + strand, within JDDGAC_08695 at 1524.111 kb on + strand, within JDDGAC_08695 at 1524.124 kb on + strand, within JDDGAC_08695 at 1524.124 kb on + strand, within JDDGAC_08695 at 1524.150 kb on + strand at 1524.187 kb on + strand at 1524.188 kb on - strand at 1524.284 kb on + strand at 1524.285 kb on - strand at 1524.329 kb on + strand at 1524.416 kb on + strand, within JDDGAC_08700 at 1524.459 kb on + strand, within JDDGAC_08700 at 1524.755 kb on + strand at 1524.779 kb on + strand at 1524.813 kb on + strand at 1524.872 kb on + strand at 1524.978 kb on + strand at 1525.074 kb on + strand, within JDDGAC_08705 at 1525.441 kb on + strand, within JDDGAC_08710 at 1525.441 kb on + strand, within JDDGAC_08710 at 1525.526 kb on + strand, within JDDGAC_08710 at 1525.608 kb on + strand, within JDDGAC_08710 at 1525.660 kb on + strand at 1525.660 kb on + strand at 1525.689 kb on + strand at 1525.689 kb on + strand at 1526.202 kb on - strand at 1526.340 kb on + strand, within JDDGAC_08720 at 1526.340 kb on + strand, within JDDGAC_08720 at 1526.383 kb on + strand at 1526.383 kb on + strand at 1526.383 kb on + strand at 1526.396 kb on + strand at 1526.411 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 1,524,012 + JDDGAC_08695 0.78 -3.3 1,524,013 - JDDGAC_08695 0.78 -0.1 1,524,013 - JDDGAC_08695 0.78 -0.8 1,524,013 - JDDGAC_08695 0.78 +0.0 1,524,016 + JDDGAC_08695 0.79 -0.2 1,524,016 + JDDGAC_08695 0.79 +0.4 1,524,016 + JDDGAC_08695 0.79 +0.5 1,524,017 - JDDGAC_08695 0.79 +1.5 1,524,043 + JDDGAC_08695 0.81 +1.6 1,524,095 + JDDGAC_08695 0.86 +0.4 1,524,108 + JDDGAC_08695 0.87 -1.2 1,524,109 - JDDGAC_08695 0.87 -1.6 1,524,111 + JDDGAC_08695 0.87 -2.2 1,524,111 + JDDGAC_08695 0.87 -0.5 1,524,124 + JDDGAC_08695 0.89 -1.0 1,524,124 + JDDGAC_08695 0.89 +0.8 1,524,150 + -0.8 1,524,187 + -0.1 1,524,188 - -1.2 1,524,284 + -1.3 1,524,285 - -0.5 1,524,329 + -1.2 1,524,416 + JDDGAC_08700 0.20 -0.3 1,524,459 + JDDGAC_08700 0.29 +1.4 1,524,755 + +0.6 1,524,779 + -0.3 1,524,813 + -0.1 1,524,872 + +0.3 1,524,978 + -1.1 1,525,074 + JDDGAC_08705 0.20 -1.6 1,525,441 + JDDGAC_08710 0.16 +0.5 1,525,441 + JDDGAC_08710 0.16 +0.2 1,525,526 + JDDGAC_08710 0.47 +0.1 1,525,608 + JDDGAC_08710 0.77 -0.4 1,525,660 + +0.9 1,525,660 + +1.9 1,525,689 + -0.3 1,525,689 + -1.0 1,526,202 - -0.3 1,526,340 + JDDGAC_08720 0.69 -0.1 1,526,340 + JDDGAC_08720 0.69 -0.3 1,526,383 + +0.9 1,526,383 + -1.6 1,526,383 + -3.2 1,526,396 + +0.6 1,526,411 + -0.6
Or see this region's nucleotide sequence