Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08660

Experiment: WM_TP6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydiL and JDDGAC_08650 are separated by 151 nucleotidesJDDGAC_08650 and JDDGAC_08655 overlap by 11 nucleotidesJDDGAC_08655 and JDDGAC_08660 are separated by 12 nucleotidesJDDGAC_08660 and JDDGAC_08665 are separated by 447 nucleotides JDDGAC_08645: ydiL - CPBP family intramembrane metalloprotease, at 1,516,085 to 1,516,903 ydiL JDDGAC_08650: JDDGAC_08650 - antitermination protein, at 1,517,055 to 1,517,426 _08650 JDDGAC_08655: JDDGAC_08655 - Endodeoxyribonuclease RusA, at 1,517,416 to 1,517,787 _08655 JDDGAC_08660: JDDGAC_08660 - DUF968 domain-containing protein, at 1,517,800 to 1,518,849 _08660 JDDGAC_08665: JDDGAC_08665 - Hok/gef family, at 1,519,297 to 1,519,509 _08665 Position (kb) 1517 1518 1519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1517.048 kb on + strandat 1517.070 kb on - strandat 1517.159 kb on + strand, within JDDGAC_08650at 1517.196 kb on + strand, within JDDGAC_08650at 1517.197 kb on - strand, within JDDGAC_08650at 1517.201 kb on - strand, within JDDGAC_08650at 1517.201 kb on - strand, within JDDGAC_08650at 1517.204 kb on - strand, within JDDGAC_08650at 1517.294 kb on + strand, within JDDGAC_08650at 1517.294 kb on + strand, within JDDGAC_08650at 1517.358 kb on + strand, within JDDGAC_08650at 1517.373 kb on - strand, within JDDGAC_08650at 1517.596 kb on - strand, within JDDGAC_08655at 1517.614 kb on - strand, within JDDGAC_08655at 1517.645 kb on - strand, within JDDGAC_08655at 1518.529 kb on + strand, within JDDGAC_08660at 1518.530 kb on - strand, within JDDGAC_08660at 1518.530 kb on - strand, within JDDGAC_08660at 1518.551 kb on + strand, within JDDGAC_08660at 1519.481 kb on + strand, within JDDGAC_08665at 1519.481 kb on + strand, within JDDGAC_08665at 1519.527 kb on - strandat 1519.533 kb on - strandat 1519.726 kb on + strandat 1519.726 kb on + strandat 1519.726 kb on + strandat 1519.727 kb on - strandat 1519.727 kb on - strandat 1519.808 kb on + strandat 1519.825 kb on + strandat 1519.842 kb on - strandat 1519.846 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
remove
1,517,048 + +0.2
1,517,070 - +0.8
1,517,159 + JDDGAC_08650 0.28 -1.6
1,517,196 + JDDGAC_08650 0.38 +1.4
1,517,197 - JDDGAC_08650 0.38 +1.0
1,517,201 - JDDGAC_08650 0.39 +0.7
1,517,201 - JDDGAC_08650 0.39 -1.7
1,517,204 - JDDGAC_08650 0.40 -0.2
1,517,294 + JDDGAC_08650 0.64 +1.7
1,517,294 + JDDGAC_08650 0.64 -1.2
1,517,358 + JDDGAC_08650 0.81 +3.8
1,517,373 - JDDGAC_08650 0.85 +0.1
1,517,596 - JDDGAC_08655 0.48 -0.5
1,517,614 - JDDGAC_08655 0.53 -0.5
1,517,645 - JDDGAC_08655 0.62 +0.2
1,518,529 + JDDGAC_08660 0.69 -1.7
1,518,530 - JDDGAC_08660 0.70 +0.3
1,518,530 - JDDGAC_08660 0.70 -2.4
1,518,551 + JDDGAC_08660 0.72 -1.6
1,519,481 + JDDGAC_08665 0.86 +0.0
1,519,481 + JDDGAC_08665 0.86 +0.7
1,519,527 - -2.8
1,519,533 - -1.8
1,519,726 + +1.6
1,519,726 + -0.6
1,519,726 + -0.2
1,519,727 - +0.0
1,519,727 - +0.5
1,519,808 + +1.1
1,519,825 + +1.6
1,519,842 - +2.2
1,519,846 - -0.2

Or see this region's nucleotide sequence