Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07585

Experiment: WM_TP6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_07565 and JDDGAC_07570 are separated by 49 nucleotidesJDDGAC_07570 and JDDGAC_07575 overlap by 1 nucleotidesJDDGAC_07575 and yeeS are separated by 62 nucleotidesyeeS and JDDGAC_07585 are separated by 15 nucleotidesJDDGAC_07585 and JDDGAC_07590 are separated by 90 nucleotides JDDGAC_07565: JDDGAC_07565 - antitoxin, at 1,310,411 to 1,310,785 _07565 JDDGAC_07570: JDDGAC_07570 - Phage-related protein, at 1,310,835 to 1,310,948 _07570 JDDGAC_07575: JDDGAC_07575 - DUF987 domain-containing protein, at 1,310,948 to 1,311,169 _07575 JDDGAC_07580: yeeS - UPF0758 protein YeeS, at 1,311,232 to 1,311,708 yeeS JDDGAC_07585: JDDGAC_07585 - restriction endonuclease, at 1,311,724 to 1,312,209 _07585 JDDGAC_07590: JDDGAC_07590 - DUF945 domain-containing protein, at 1,312,300 to 1,313,118 _07590 Position (kb) 1311 1312 1313Strain fitness (log2 ratio) -2 -1 0 1 2at 1310.763 kb on - strandat 1310.812 kb on - strandat 1310.870 kb on - strand, within JDDGAC_07570at 1310.870 kb on - strand, within JDDGAC_07570at 1310.979 kb on + strand, within JDDGAC_07575at 1311.055 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.058 kb on - strand, within JDDGAC_07575at 1311.058 kb on - strand, within JDDGAC_07575at 1311.084 kb on + strand, within JDDGAC_07575at 1311.088 kb on + strand, within JDDGAC_07575at 1311.136 kb on + strand, within JDDGAC_07575at 1311.197 kb on - strandat 1311.420 kb on - strand, within yeeSat 1311.839 kb on + strand, within JDDGAC_07585at 1311.840 kb on - strand, within JDDGAC_07585at 1311.840 kb on - strand, within JDDGAC_07585at 1311.958 kb on - strand, within JDDGAC_07585at 1312.440 kb on + strand, within JDDGAC_07590at 1312.662 kb on - strand, within JDDGAC_07590at 1312.883 kb on + strand, within JDDGAC_07590at 1312.982 kb on + strand, within JDDGAC_07590at 1312.988 kb on + strand, within JDDGAC_07590at 1313.007 kb on + strand, within JDDGAC_07590at 1313.028 kb on + strand, within JDDGAC_07590at 1313.131 kb on - strandat 1313.131 kb on - strandat 1313.131 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
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1,310,763 - +2.2
1,310,812 - +1.2
1,310,870 - JDDGAC_07570 0.31 +1.1
1,310,870 - JDDGAC_07570 0.31 +0.9
1,310,979 + JDDGAC_07575 0.14 +1.2
1,311,055 + JDDGAC_07575 0.48 +0.1
1,311,057 + JDDGAC_07575 0.49 -0.1
1,311,057 + JDDGAC_07575 0.49 +0.9
1,311,057 + JDDGAC_07575 0.49 +0.1
1,311,057 + JDDGAC_07575 0.49 +0.4
1,311,057 + JDDGAC_07575 0.49 +0.6
1,311,057 + JDDGAC_07575 0.49 -0.3
1,311,058 - JDDGAC_07575 0.50 +0.4
1,311,058 - JDDGAC_07575 0.50 +0.9
1,311,084 + JDDGAC_07575 0.61 -0.5
1,311,088 + JDDGAC_07575 0.63 +0.8
1,311,136 + JDDGAC_07575 0.85 -1.6
1,311,197 - -0.7
1,311,420 - yeeS JDDGAC_07580 0.39 +0.1
1,311,839 + JDDGAC_07585 0.24 -0.6
1,311,840 - JDDGAC_07585 0.24 +0.9
1,311,840 - JDDGAC_07585 0.24 -2.1
1,311,958 - JDDGAC_07585 0.48 -1.2
1,312,440 + JDDGAC_07590 0.17 -0.1
1,312,662 - JDDGAC_07590 0.44 +0.9
1,312,883 + JDDGAC_07590 0.71 -0.9
1,312,982 + JDDGAC_07590 0.83 -0.8
1,312,988 + JDDGAC_07590 0.84 +0.1
1,313,007 + JDDGAC_07590 0.86 +0.4
1,313,028 + JDDGAC_07590 0.89 +1.2
1,313,131 - -1.5
1,313,131 - -0.6
1,313,131 - -1.6

Or see this region's nucleotide sequence