Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06755

Experiment: WM_TP6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespK and JDDGAC_06755 are separated by 188 nucleotidesJDDGAC_06755 and JDDGAC_06760 are separated by 141 nucleotidesJDDGAC_06760 and tnp-IS3 are separated by 10 nucleotidestnp-IS3 and JDDGAC_06770 are separated by 161 nucleotides JDDGAC_06750: espK - type III secretion system effector EspK, at 1,175,402 to 1,176,763 espK JDDGAC_06755: JDDGAC_06755 - hypothetical protein, at 1,176,952 to 1,177,185 _06755 JDDGAC_06760: JDDGAC_06760 - Mutator family transposase, at 1,177,327 to 1,177,626 _06760 JDDGAC_06765: tnp-IS3 - IS3 family transposase, at 1,177,637 to 1,177,798 tnp-IS3 JDDGAC_06770: JDDGAC_06770 - IS3 family transposase, at 1,177,960 to 1,178,865 _06770 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1175.975 kb on - strand, within espKat 1175.977 kb on + strand, within espKat 1175.977 kb on + strand, within espKat 1175.978 kb on - strand, within espKat 1176.118 kb on - strand, within espKat 1176.194 kb on + strand, within espKat 1176.562 kb on + strand, within espKat 1176.562 kb on + strand, within espKat 1176.921 kb on + strandat 1176.926 kb on - strandat 1176.946 kb on - strandat 1176.949 kb on + strandat 1176.953 kb on + strandat 1177.056 kb on + strand, within JDDGAC_06755at 1177.081 kb on - strand, within JDDGAC_06755at 1177.215 kb on - strandat 1177.261 kb on + strandat 1177.538 kb on + strand, within JDDGAC_06760at 1177.589 kb on + strand, within JDDGAC_06760at 1177.603 kb on - strandat 1177.603 kb on - strandat 1177.605 kb on + strandat 1177.615 kb on + strandat 1177.620 kb on + strandat 1177.793 kb on + strandat 1177.793 kb on + strandat 1177.793 kb on + strandat 1177.796 kb on + strandat 1177.876 kb on + strandat 1178.045 kb on - strandat 1178.106 kb on + strand, within JDDGAC_06770at 1178.124 kb on + strand, within JDDGAC_06770at 1178.126 kb on + strand, within JDDGAC_06770at 1178.126 kb on + strand, within JDDGAC_06770at 1178.127 kb on - strand, within JDDGAC_06770at 1178.156 kb on - strand, within JDDGAC_06770at 1178.156 kb on - strand, within JDDGAC_06770at 1178.156 kb on - strand, within JDDGAC_06770at 1178.156 kb on - strand, within JDDGAC_06770

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
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1,175,975 - espK JDDGAC_06750 0.42 -1.4
1,175,977 + espK JDDGAC_06750 0.42 -0.6
1,175,977 + espK JDDGAC_06750 0.42 +0.2
1,175,978 - espK JDDGAC_06750 0.42 +3.8
1,176,118 - espK JDDGAC_06750 0.53 +1.9
1,176,194 + espK JDDGAC_06750 0.58 -2.0
1,176,562 + espK JDDGAC_06750 0.85 +0.4
1,176,562 + espK JDDGAC_06750 0.85 -1.8
1,176,921 + -2.9
1,176,926 - -1.5
1,176,946 - -2.2
1,176,949 + -0.6
1,176,953 + -0.8
1,177,056 + JDDGAC_06755 0.44 -1.4
1,177,081 - JDDGAC_06755 0.55 -0.4
1,177,215 - +1.8
1,177,261 + +1.6
1,177,538 + JDDGAC_06760 0.70 -1.9
1,177,589 + JDDGAC_06760 0.87 -0.1
1,177,603 - +0.6
1,177,603 - +1.6
1,177,605 + -0.2
1,177,615 + +0.2
1,177,620 + +0.4
1,177,793 + +0.4
1,177,793 + -0.4
1,177,793 + +0.0
1,177,796 + +0.3
1,177,876 + +0.2
1,178,045 - +1.5
1,178,106 + JDDGAC_06770 0.16 +0.1
1,178,124 + JDDGAC_06770 0.18 +0.3
1,178,126 + JDDGAC_06770 0.18 +0.2
1,178,126 + JDDGAC_06770 0.18 +1.0
1,178,127 - JDDGAC_06770 0.18 -0.3
1,178,156 - JDDGAC_06770 0.22 +0.2
1,178,156 - JDDGAC_06770 0.22 +0.5
1,178,156 - JDDGAC_06770 0.22 +0.2
1,178,156 - JDDGAC_06770 0.22 +0.5

Or see this region's nucleotide sequence