Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_04690 and JDDGAC_04695 are separated by 250 nucleotides JDDGAC_04695 and xisR are separated by 99 nucleotides xisR and fimB are separated by 1 nucleotides fimB and ttcA are separated by 52 nucleotides
JDDGAC_04690: JDDGAC_04690 - Enterohemolysin, at 814,718 to 815,770
_04690
JDDGAC_04695: JDDGAC_04695 - DUF1187 domain-containing protein, at 816,021 to 816,209
_04695
JDDGAC_04705: xisR - excisionase XisR, at 816,309 to 816,524
xisR
JDDGAC_04710: fimB - site-specific integrase, at 816,526 to 817,761
fimB
JDDGAC_04715: ttcA - tRNA 2-thiocytidine(32) synthetase TtcA, at 817,814 to 818,749
ttcA
Position (kb) 816
817
818 Strain fitness (log2 ratio) -2
-1
0
1
2 at 815.593 kb on + strand, within JDDGAC_04690 at 817.305 kb on + strand, within fimB at 817.306 kb on - strand, within fimB at 817.365 kb on + strand, within fimB at 817.387 kb on + strand, within fimB at 817.516 kb on + strand, within fimB at 817.647 kb on + strand at 817.647 kb on + strand at 817.649 kb on + strand at 817.737 kb on + strand at 817.850 kb on + strand at 817.866 kb on + strand at 817.970 kb on + strand, within ttcA at 817.971 kb on - strand, within ttcA at 818.039 kb on - strand, within ttcA at 818.112 kb on - strand, within ttcA at 818.135 kb on + strand, within ttcA at 818.135 kb on + strand, within ttcA at 818.135 kb on + strand, within ttcA at 818.135 kb on + strand, within ttcA at 818.135 kb on + strand, within ttcA at 818.136 kb on - strand, within ttcA at 818.197 kb on - strand, within ttcA at 818.292 kb on + strand, within ttcA at 818.292 kb on + strand, within ttcA at 818.296 kb on + strand, within ttcA at 818.296 kb on + strand, within ttcA at 818.297 kb on - strand, within ttcA at 818.323 kb on + strand, within ttcA at 818.465 kb on - strand, within ttcA at 818.528 kb on - strand, within ttcA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 815,593 + JDDGAC_04690 0.83 +0.8 817,305 + fimB JDDGAC_04710 0.63 -0.9 817,306 - fimB JDDGAC_04710 0.63 -1.5 817,365 + fimB JDDGAC_04710 0.68 -2.7 817,387 + fimB JDDGAC_04710 0.70 -1.0 817,516 + fimB JDDGAC_04710 0.80 -0.3 817,647 + +0.8 817,647 + +0.8 817,649 + -0.3 817,737 + +0.3 817,850 + +1.3 817,866 + +0.5 817,970 + ttcA JDDGAC_04715 0.17 -0.5 817,971 - ttcA JDDGAC_04715 0.17 -2.0 818,039 - ttcA JDDGAC_04715 0.24 -0.7 818,112 - ttcA JDDGAC_04715 0.32 -0.3 818,135 + ttcA JDDGAC_04715 0.34 +0.1 818,135 + ttcA JDDGAC_04715 0.34 +0.3 818,135 + ttcA JDDGAC_04715 0.34 +1.9 818,135 + ttcA JDDGAC_04715 0.34 -0.3 818,135 + ttcA JDDGAC_04715 0.34 +0.5 818,136 - ttcA JDDGAC_04715 0.34 +0.2 818,197 - ttcA JDDGAC_04715 0.41 +0.8 818,292 + ttcA JDDGAC_04715 0.51 +0.5 818,292 + ttcA JDDGAC_04715 0.51 +2.4 818,296 + ttcA JDDGAC_04715 0.51 +1.0 818,296 + ttcA JDDGAC_04715 0.51 +0.1 818,297 - ttcA JDDGAC_04715 0.52 +0.9 818,323 + ttcA JDDGAC_04715 0.54 -2.4 818,465 - ttcA JDDGAC_04715 0.70 +1.1 818,528 - ttcA JDDGAC_04715 0.76 -0.9
Or see this region's nucleotide sequence