Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03505

Experiment: WM_TP6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnleG5-2 and JDDGAC_03500 are separated by 161 nucleotidesJDDGAC_03500 and ydfJ are separated by 59 nucleotidesydfJ and ydfI are separated by 88 nucleotides JDDGAC_03495: nleG5-2 - T3SS effector NleG family protein, at 581,166 to 581,807 nleG5-2 JDDGAC_03500: JDDGAC_03500 - DinI-like protein Z2083/ECs2153, at 581,969 to 582,283 _03500 JDDGAC_03505: ydfJ - Putative transporter YdfJ, at 582,343 to 583,626 ydfJ JDDGAC_03510: ydfI - Uncharacterized oxidoreductase YdfI, at 583,715 to 585,175 ydfI Position (kb) 582 583 584Strain fitness (log2 ratio) -2 -1 0 1 2at 582.837 kb on - strand, within ydfJat 583.057 kb on + strand, within ydfJat 583.186 kb on + strand, within ydfJat 583.296 kb on + strand, within ydfJat 583.384 kb on - strand, within ydfJat 583.440 kb on + strand, within ydfJat 583.595 kb on + strandat 583.625 kb on - strandat 583.683 kb on + strandat 583.703 kb on + strandat 583.795 kb on - strandat 583.833 kb on - strandat 583.875 kb on - strand, within ydfIat 584.128 kb on - strand, within ydfIat 584.328 kb on + strand, within ydfIat 584.353 kb on + strand, within ydfIat 584.354 kb on - strand, within ydfIat 584.386 kb on + strand, within ydfIat 584.387 kb on - strand, within ydfIat 584.410 kb on + strand, within ydfIat 584.434 kb on + strand, within ydfIat 584.548 kb on + strand, within ydfI

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
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582,837 - ydfJ JDDGAC_03505 0.38 -1.5
583,057 + ydfJ JDDGAC_03505 0.56 -1.1
583,186 + ydfJ JDDGAC_03505 0.66 -2.1
583,296 + ydfJ JDDGAC_03505 0.74 -1.3
583,384 - ydfJ JDDGAC_03505 0.81 +1.1
583,440 + ydfJ JDDGAC_03505 0.85 +0.9
583,595 + +0.7
583,625 - -1.3
583,683 + -0.1
583,703 + +0.7
583,795 - -0.2
583,833 - +0.1
583,875 - ydfI JDDGAC_03510 0.11 +1.9
584,128 - ydfI JDDGAC_03510 0.28 +0.1
584,328 + ydfI JDDGAC_03510 0.42 +0.8
584,353 + ydfI JDDGAC_03510 0.44 -1.9
584,354 - ydfI JDDGAC_03510 0.44 +0.2
584,386 + ydfI JDDGAC_03510 0.46 -2.2
584,387 - ydfI JDDGAC_03510 0.46 +0.1
584,410 + ydfI JDDGAC_03510 0.48 -0.8
584,434 + ydfI JDDGAC_03510 0.49 +0.1
584,548 + ydfI JDDGAC_03510 0.57 -0.7

Or see this region's nucleotide sequence