Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01295

Experiment: WM_TP6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmipA and yeaE are separated by 89 nucleotidesyeaE and yeaD are separated by 50 nucleotides JDDGAC_01290: mipA - scaffolding protein MipA, at 221,162 to 221,908 mipA JDDGAC_01295: yeaE - methylglyoxal reductase YeaE, at 221,998 to 222,852 yeaE JDDGAC_01300: yeaD - Putative glucose-6-phosphate 1-epimerase, at 222,903 to 223,787 yeaD Position (kb) 221 222 223Strain fitness (log2 ratio) -2 -1 0 1 2 3at 221.013 kb on - strandat 221.157 kb on + strandat 221.256 kb on + strand, within mipAat 221.256 kb on + strand, within mipAat 221.256 kb on + strand, within mipAat 221.276 kb on + strand, within mipAat 221.278 kb on + strand, within mipAat 221.278 kb on + strand, within mipAat 221.278 kb on + strand, within mipAat 221.278 kb on + strand, within mipAat 221.278 kb on + strand, within mipAat 221.285 kb on + strand, within mipAat 221.300 kb on + strand, within mipAat 221.322 kb on - strand, within mipAat 221.352 kb on + strand, within mipAat 221.363 kb on + strand, within mipAat 221.366 kb on + strand, within mipAat 221.366 kb on + strand, within mipAat 221.476 kb on + strand, within mipAat 221.504 kb on + strand, within mipAat 221.600 kb on + strand, within mipAat 221.678 kb on + strand, within mipAat 221.678 kb on + strand, within mipAat 221.678 kb on + strand, within mipAat 221.681 kb on + strand, within mipAat 222.064 kb on + strandat 222.064 kb on + strandat 222.065 kb on - strandat 222.066 kb on + strandat 222.234 kb on + strand, within yeaEat 222.499 kb on + strand, within yeaEat 222.674 kb on + strand, within yeaEat 222.859 kb on + strandat 223.010 kb on - strand, within yeaDat 223.038 kb on - strand, within yeaDat 223.069 kb on - strand, within yeaDat 223.229 kb on + strand, within yeaDat 223.269 kb on - strand, within yeaDat 223.292 kb on - strand, within yeaDat 223.662 kb on + strand, within yeaDat 223.681 kb on - strand, within yeaDat 223.782 kb on - strandat 223.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
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221,013 - -0.5
221,157 + -2.0
221,256 + mipA JDDGAC_01290 0.13 +0.0
221,256 + mipA JDDGAC_01290 0.13 -0.5
221,256 + mipA JDDGAC_01290 0.13 +1.7
221,276 + mipA JDDGAC_01290 0.15 -0.1
221,278 + mipA JDDGAC_01290 0.16 +0.8
221,278 + mipA JDDGAC_01290 0.16 -0.1
221,278 + mipA JDDGAC_01290 0.16 -0.4
221,278 + mipA JDDGAC_01290 0.16 -0.9
221,278 + mipA JDDGAC_01290 0.16 -0.5
221,285 + mipA JDDGAC_01290 0.16 -0.2
221,300 + mipA JDDGAC_01290 0.18 +1.3
221,322 - mipA JDDGAC_01290 0.21 +0.1
221,352 + mipA JDDGAC_01290 0.25 +0.4
221,363 + mipA JDDGAC_01290 0.27 -0.8
221,366 + mipA JDDGAC_01290 0.27 +0.0
221,366 + mipA JDDGAC_01290 0.27 -0.7
221,476 + mipA JDDGAC_01290 0.42 +0.1
221,504 + mipA JDDGAC_01290 0.46 -2.6
221,600 + mipA JDDGAC_01290 0.59 +0.4
221,678 + mipA JDDGAC_01290 0.69 +1.2
221,678 + mipA JDDGAC_01290 0.69 -0.6
221,678 + mipA JDDGAC_01290 0.69 -2.1
221,681 + mipA JDDGAC_01290 0.69 -0.7
222,064 + +0.5
222,064 + +3.3
222,065 - -0.3
222,066 + -0.6
222,234 + yeaE JDDGAC_01295 0.28 -0.9
222,499 + yeaE JDDGAC_01295 0.59 -0.1
222,674 + yeaE JDDGAC_01295 0.79 -1.6
222,859 + +0.9
223,010 - yeaD JDDGAC_01300 0.12 -1.9
223,038 - yeaD JDDGAC_01300 0.15 -1.9
223,069 - yeaD JDDGAC_01300 0.19 +0.1
223,229 + yeaD JDDGAC_01300 0.37 +0.1
223,269 - yeaD JDDGAC_01300 0.41 +0.3
223,292 - yeaD JDDGAC_01300 0.44 +1.1
223,662 + yeaD JDDGAC_01300 0.86 +2.3
223,681 - yeaD JDDGAC_01300 0.88 +0.1
223,782 - +0.9
223,811 + +0.9

Or see this region's nucleotide sequence