Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hexR and JDDGAC_00905 are separated by 22 nucleotides JDDGAC_00905 and zwf are separated by 165 nucleotides zwf and edd are separated by 234 nucleotides
JDDGAC_00900: hexR - DNA-binding transcriptional regulator HexR, at 149,887 to 150,756
hexR
JDDGAC_00905: JDDGAC_00905 - hypothetical protein, at 150,779 to 150,928
_00905
JDDGAC_00910: zwf - glucose-6-phosphate dehydrogenase, at 151,094 to 152,569
zwf
JDDGAC_00915: edd - phosphogluconate dehydratase, at 152,804 to 154,615
edd
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.246 kb on + strand, within hexR at 150.247 kb on - strand, within hexR at 150.247 kb on - strand, within hexR at 150.312 kb on + strand, within hexR at 150.313 kb on - strand, within hexR at 150.463 kb on + strand, within hexR at 150.519 kb on - strand, within hexR at 150.649 kb on - strand, within hexR at 150.761 kb on + strand at 150.778 kb on - strand at 150.825 kb on + strand, within JDDGAC_00905 at 150.826 kb on - strand, within JDDGAC_00905 at 150.829 kb on - strand, within JDDGAC_00905 at 150.829 kb on - strand, within JDDGAC_00905 at 150.964 kb on + strand at 151.034 kb on - strand at 151.042 kb on + strand at 151.060 kb on + strand at 151.076 kb on + strand at 151.076 kb on + strand at 152.315 kb on + strand, within zwf at 152.570 kb on + strand at 152.709 kb on + strand at 152.804 kb on - strand at 153.023 kb on + strand, within edd at 153.024 kb on - strand, within edd at 153.079 kb on + strand, within edd at 153.080 kb on - strand, within edd at 153.230 kb on - strand, within edd at 153.379 kb on + strand, within edd at 153.392 kb on + strand, within edd at 153.392 kb on + strand, within edd at 153.423 kb on + strand, within edd at 153.446 kb on + strand, within edd at 153.447 kb on - strand, within edd at 153.466 kb on + strand, within edd at 153.466 kb on + strand, within edd at 153.466 kb on + strand, within edd at 153.467 kb on - strand, within edd
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 150,246 + hexR JDDGAC_00900 0.41 -1.0 150,247 - hexR JDDGAC_00900 0.41 -0.4 150,247 - hexR JDDGAC_00900 0.41 -1.8 150,312 + hexR JDDGAC_00900 0.49 +2.2 150,313 - hexR JDDGAC_00900 0.49 -2.4 150,463 + hexR JDDGAC_00900 0.66 +0.8 150,519 - hexR JDDGAC_00900 0.73 -0.5 150,649 - hexR JDDGAC_00900 0.88 -1.6 150,761 + -0.0 150,778 - -0.3 150,825 + JDDGAC_00905 0.31 +1.1 150,826 - JDDGAC_00905 0.31 -2.4 150,829 - JDDGAC_00905 0.33 +2.2 150,829 - JDDGAC_00905 0.33 +0.3 150,964 + +0.0 151,034 - +2.0 151,042 + -0.2 151,060 + +0.9 151,076 + -0.9 151,076 + -0.3 152,315 + zwf JDDGAC_00910 0.83 -1.1 152,570 + -3.1 152,709 + -0.9 152,804 - +1.0 153,023 + edd JDDGAC_00915 0.12 +0.5 153,024 - edd JDDGAC_00915 0.12 +1.5 153,079 + edd JDDGAC_00915 0.15 -0.4 153,080 - edd JDDGAC_00915 0.15 +2.7 153,230 - edd JDDGAC_00915 0.24 +1.3 153,379 + edd JDDGAC_00915 0.32 +0.3 153,392 + edd JDDGAC_00915 0.32 -2.7 153,392 + edd JDDGAC_00915 0.32 -1.5 153,423 + edd JDDGAC_00915 0.34 -0.5 153,446 + edd JDDGAC_00915 0.35 +1.4 153,447 - edd JDDGAC_00915 0.35 +0.1 153,466 + edd JDDGAC_00915 0.37 +1.1 153,466 + edd JDDGAC_00915 0.37 -0.8 153,466 + edd JDDGAC_00915 0.37 +0.4 153,467 - edd JDDGAC_00915 0.37 -0.2
Or see this region's nucleotide sequence