Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliK and fliJ overlap by 4 nucleotides fliJ and fliI are separated by 18 nucleotides fliI and fliH are separated by 61 nucleotides fliH and fliG overlap by 8 nucleotides
JDDGAC_00275: fliK - flagellar hook length control protein FliK, at 45,176 to 46,303
fliK
JDDGAC_00280: fliJ - flagella biosynthesis chaperone FliJ, at 46,300 to 46,743
fliJ
JDDGAC_00285: fliI - flagellum-specific ATP synthase FliI, at 46,762 to 48,135
fliI
JDDGAC_00290: fliH - flagellar assembly protein FliH, at 48,197 to 48,883
fliH
JDDGAC_00295: fliG - flagellar motor switch protein FliG, at 48,876 to 49,871
fliG
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 46.078 kb on + strand, within fliK at 46.079 kb on - strand, within fliK at 46.576 kb on - strand, within fliJ at 46.691 kb on - strand, within fliJ at 46.844 kb on + strand at 47.158 kb on - strand, within fliI at 47.574 kb on + strand, within fliI at 47.575 kb on - strand, within fliI at 47.680 kb on - strand, within fliI at 48.110 kb on - strand at 48.136 kb on + strand at 48.137 kb on - strand at 48.287 kb on - strand, within fliH at 48.341 kb on + strand, within fliH at 48.347 kb on - strand, within fliH at 48.545 kb on - strand, within fliH at 48.563 kb on - strand, within fliH at 48.670 kb on - strand, within fliH at 48.679 kb on + strand, within fliH at 48.680 kb on - strand, within fliH at 48.883 kb on + strand at 48.884 kb on - strand at 48.884 kb on - strand at 48.884 kb on - strand at 48.884 kb on - strand at 48.884 kb on - strand at 48.888 kb on - strand at 49.040 kb on + strand, within fliG at 49.040 kb on + strand, within fliG at 49.041 kb on - strand, within fliG
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 46,078 + fliK JDDGAC_00275 0.80 +0.1 46,079 - fliK JDDGAC_00275 0.80 +0.6 46,576 - fliJ JDDGAC_00280 0.62 -1.3 46,691 - fliJ JDDGAC_00280 0.88 +0.1 46,844 + +0.6 47,158 - fliI JDDGAC_00285 0.29 -1.6 47,574 + fliI JDDGAC_00285 0.59 -0.3 47,575 - fliI JDDGAC_00285 0.59 -1.3 47,680 - fliI JDDGAC_00285 0.67 -1.5 48,110 - -1.0 48,136 + +0.7 48,137 - +0.8 48,287 - fliH JDDGAC_00290 0.13 +0.4 48,341 + fliH JDDGAC_00290 0.21 -0.5 48,347 - fliH JDDGAC_00290 0.22 +1.0 48,545 - fliH JDDGAC_00290 0.51 -2.8 48,563 - fliH JDDGAC_00290 0.53 -2.0 48,670 - fliH JDDGAC_00290 0.69 -0.1 48,679 + fliH JDDGAC_00290 0.70 +0.3 48,680 - fliH JDDGAC_00290 0.70 -2.7 48,883 + -1.0 48,884 - +0.0 48,884 - -1.5 48,884 - +0.3 48,884 - -0.5 48,884 - -0.4 48,888 - -0.1 49,040 + fliG JDDGAC_00295 0.16 +1.3 49,040 + fliG JDDGAC_00295 0.16 +0.5 49,041 - fliG JDDGAC_00295 0.17 +0.4
Or see this region's nucleotide sequence