Experiment: GB_JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_17145 and MCAODC_17150 overlap by 4 nucleotides MCAODC_17150 and MCAODC_17155 are separated by 347 nucleotides MCAODC_17155 and MCAODC_17160 overlap by 8 nucleotides MCAODC_17160 and MCAODC_17165 overlap by 4 nucleotides MCAODC_17165 and MCAODC_17170 are separated by 32 nucleotides
MCAODC_17145: MCAODC_17145 - Bacteriophage protein, at 325,289 to 325,372
_17145
MCAODC_17150: MCAODC_17150 - DUF551 domain-containing protein, at 325,369 to 325,926
_17150
MCAODC_17155: MCAODC_17155 - Prophage protein, at 326,274 to 326,585
_17155
MCAODC_17160: MCAODC_17160 - hypothetical protein, at 326,578 to 326,805
_17160
MCAODC_17165: MCAODC_17165 - DNA-binding protein, at 326,802 to 327,083
_17165
MCAODC_17170: MCAODC_17170 - DUF1627 domain-containing protein, at 327,116 to 327,832
_17170
Position (kb) 326
327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 325.312 kb on - strand, within MCAODC_17145 at 325.450 kb on + strand, within MCAODC_17150 at 325.451 kb on - strand, within MCAODC_17150 at 325.453 kb on - strand, within MCAODC_17150 at 325.496 kb on - strand, within MCAODC_17150 at 325.496 kb on - strand, within MCAODC_17150 at 325.499 kb on - strand, within MCAODC_17150 at 325.533 kb on + strand, within MCAODC_17150 at 325.534 kb on - strand, within MCAODC_17150 at 325.534 kb on - strand, within MCAODC_17150 at 325.595 kb on - strand, within MCAODC_17150 at 325.716 kb on - strand, within MCAODC_17150 at 325.825 kb on - strand, within MCAODC_17150 at 325.887 kb on - strand at 325.915 kb on - strand at 325.994 kb on - strand at 325.996 kb on - strand at 325.997 kb on + strand at 325.997 kb on + strand at 325.997 kb on + strand at 325.998 kb on - strand at 325.998 kb on - strand at 326.043 kb on - strand at 326.072 kb on + strand at 326.073 kb on - strand at 326.073 kb on - strand at 326.246 kb on + strand at 326.388 kb on - strand, within MCAODC_17155 at 326.444 kb on - strand, within MCAODC_17155 at 326.613 kb on - strand, within MCAODC_17160 at 326.642 kb on + strand, within MCAODC_17160 at 326.643 kb on - strand, within MCAODC_17160 at 326.643 kb on - strand, within MCAODC_17160 at 326.643 kb on - strand, within MCAODC_17160 at 326.645 kb on - strand, within MCAODC_17160 at 326.784 kb on - strand at 326.793 kb on - strand at 326.833 kb on + strand, within MCAODC_17165 at 326.845 kb on - strand, within MCAODC_17165 at 326.845 kb on - strand, within MCAODC_17165 at 326.967 kb on + strand, within MCAODC_17165 at 326.967 kb on + strand, within MCAODC_17165 at 326.968 kb on - strand, within MCAODC_17165 at 326.968 kb on - strand, within MCAODC_17165 at 327.048 kb on + strand, within MCAODC_17165 at 327.049 kb on - strand, within MCAODC_17165 at 327.049 kb on - strand, within MCAODC_17165 at 327.078 kb on + strand at 327.078 kb on + strand at 327.078 kb on + strand at 327.146 kb on - strand at 327.554 kb on - strand, within MCAODC_17170
Per-strain Table
Position Strand Gene LocusTag Fraction GB_JK42 remove 325,312 - MCAODC_17145 0.27 -1.2 325,450 + MCAODC_17150 0.15 +3.0 325,451 - MCAODC_17150 0.15 +0.9 325,453 - MCAODC_17150 0.15 +0.0 325,496 - MCAODC_17150 0.23 +0.9 325,496 - MCAODC_17150 0.23 -1.3 325,499 - MCAODC_17150 0.23 -1.2 325,533 + MCAODC_17150 0.29 +2.3 325,534 - MCAODC_17150 0.30 +1.5 325,534 - MCAODC_17150 0.30 +0.4 325,595 - MCAODC_17150 0.41 -1.6 325,716 - MCAODC_17150 0.62 -1.0 325,825 - MCAODC_17150 0.82 +2.3 325,887 - +0.3 325,915 - +0.7 325,994 - -0.9 325,996 - -1.6 325,997 + +1.8 325,997 + +0.7 325,997 + +1.2 325,998 - +0.8 325,998 - +2.4 326,043 - -1.9 326,072 + -1.4 326,073 - -0.6 326,073 - -0.6 326,246 + -0.1 326,388 - MCAODC_17155 0.37 -1.2 326,444 - MCAODC_17155 0.54 -2.8 326,613 - MCAODC_17160 0.15 -2.2 326,642 + MCAODC_17160 0.28 +1.7 326,643 - MCAODC_17160 0.29 -0.1 326,643 - MCAODC_17160 0.29 -0.8 326,643 - MCAODC_17160 0.29 -0.8 326,645 - MCAODC_17160 0.29 +0.4 326,784 - -0.1 326,793 - +1.6 326,833 + MCAODC_17165 0.11 +1.2 326,845 - MCAODC_17165 0.15 +1.9 326,845 - MCAODC_17165 0.15 -2.5 326,967 + MCAODC_17165 0.59 +0.5 326,967 + MCAODC_17165 0.59 -2.3 326,968 - MCAODC_17165 0.59 -2.1 326,968 - MCAODC_17165 0.59 +0.9 327,048 + MCAODC_17165 0.87 +2.0 327,049 - MCAODC_17165 0.88 +1.2 327,049 - MCAODC_17165 0.88 -1.4 327,078 + +0.9 327,078 + -1.6 327,078 + -1.9 327,146 - -2.1 327,554 - MCAODC_17170 0.61 +0.9
Or see this region's nucleotide sequence