Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nleG5-1 and JDDGAC_27990 are separated by 161 nucleotides JDDGAC_27990 and JDDGAC_27995 are separated by 224 nucleotides JDDGAC_27995 and btsS are separated by 221 nucleotides
JDDGAC_27985: nleG5-1 - DUF1076 domain-containing protein, at 5,362,023 to 5,362,664
nleG5-1
JDDGAC_27990: JDDGAC_27990 - DinI-like protein Z3916/ECs3483, at 5,362,826 to 5,363,074
_27990
JDDGAC_27995: JDDGAC_27995 - IS4 family transposase, at 5,363,299 to 5,363,367
_27995
JDDGAC_28000: btsS - two-component regulatory system sensor histidine kinase BtsS, at 5,363,589 to 5,365,274
btsS
Position (kb) 5363
5364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5362.750 kb on + strand at 5363.057 kb on - strand at 5363.093 kb on + strand at 5363.093 kb on + strand at 5363.094 kb on - strand at 5363.102 kb on - strand at 5363.177 kb on + strand at 5363.177 kb on + strand at 5363.177 kb on + strand at 5363.323 kb on - strand, within JDDGAC_27995 at 5363.357 kb on + strand, within JDDGAC_27995 at 5363.452 kb on + strand at 5363.453 kb on - strand at 5363.453 kb on - strand at 5363.494 kb on + strand at 5363.494 kb on + strand at 5363.551 kb on + strand at 5363.551 kb on + strand at 5363.551 kb on + strand at 5363.551 kb on + strand at 5363.552 kb on - strand at 5363.552 kb on - strand at 5363.556 kb on + strand at 5363.727 kb on + strand at 5363.728 kb on - strand at 5363.728 kb on - strand at 5363.830 kb on + strand, within btsS at 5363.911 kb on + strand, within btsS at 5363.960 kb on - strand, within btsS at 5364.107 kb on + strand, within btsS at 5364.164 kb on + strand, within btsS at 5364.166 kb on + strand, within btsS at 5364.306 kb on + strand, within btsS
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,362,750 + +1.5 5,363,057 - -2.6 5,363,093 + +2.4 5,363,093 + -2.9 5,363,094 - -0.0 5,363,102 - -1.4 5,363,177 + +1.4 5,363,177 + -1.4 5,363,177 + +1.2 5,363,323 - JDDGAC_27995 0.35 -2.1 5,363,357 + JDDGAC_27995 0.84 -2.6 5,363,452 + -2.1 5,363,453 - -2.5 5,363,453 - +0.1 5,363,494 + +1.3 5,363,494 + +0.3 5,363,551 + +0.9 5,363,551 + -1.2 5,363,551 + +0.5 5,363,551 + +0.3 5,363,552 - +1.1 5,363,552 - -2.0 5,363,556 + -0.1 5,363,727 + +0.7 5,363,728 - +1.6 5,363,728 - +0.5 5,363,830 + btsS JDDGAC_28000 0.14 -1.3 5,363,911 + btsS JDDGAC_28000 0.19 +0.1 5,363,960 - btsS JDDGAC_28000 0.22 +0.1 5,364,107 + btsS JDDGAC_28000 0.31 +1.0 5,364,164 + btsS JDDGAC_28000 0.34 -1.6 5,364,166 + btsS JDDGAC_28000 0.34 -1.2 5,364,306 + btsS JDDGAC_28000 0.43 +0.2
Or see this region's nucleotide sequence