Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hipB and JDDGAC_05840 are separated by 263 nucleotides JDDGAC_05840 and JDDGAC_05845 are separated by 72 nucleotides JDDGAC_05845 and JDDGAC_05850 are separated by 22 nucleotides JDDGAC_05850 and JDDGAC_05855 overlap by 23 nucleotides JDDGAC_05855 and dicB are separated by 558 nucleotides dicB and JDDGAC_05865 overlap by 4 nucleotides
JDDGAC_05835: hipB - transcriptional regulator, at 1,013,177 to 1,013,584
hipB
JDDGAC_05840: JDDGAC_05840 - hypothetical protein, at 1,013,848 to 1,014,147
_05840
JDDGAC_05845: JDDGAC_05845 - Uncharacterized protein YdfC, at 1,014,220 to 1,014,438
_05845
JDDGAC_05850: JDDGAC_05850 - hypothetical protein, at 1,014,461 to 1,014,868
_05850
JDDGAC_05855: JDDGAC_05855 - hypothetical protein, at 1,014,846 to 1,015,079
_05855
JDDGAC_05860: dicB - Division inhibition protein DicB, at 1,015,638 to 1,015,826
dicB
JDDGAC_05865: JDDGAC_05865 - DUF1482 domain-containing protein, at 1,015,823 to 1,016,014
_05865
Position (kb) 1014
1015 Strain fitness (log2 ratio) -2
-1
0
1 at 1013.578 kb on + strand at 1013.857 kb on + strand at 1014.530 kb on - strand, within JDDGAC_05850 at 1014.609 kb on - strand, within JDDGAC_05850 at 1014.827 kb on - strand, within JDDGAC_05850
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 1,013,578 + +0.9 1,013,857 + -2.3 1,014,530 - JDDGAC_05850 0.17 -2.3 1,014,609 - JDDGAC_05850 0.36 -0.4 1,014,827 - JDDGAC_05850 0.90 -2.5
Or see this region's nucleotide sequence