Strain Fitness in Escherichia coli ECRC98 around JDDGAC_05255

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnleG and JDDGAC_05255 are separated by 754 nucleotidesJDDGAC_05255 and tnpB are separated by 304 nucleotidestnpB and tnpB overlap by 4 nucleotides JDDGAC_05250: nleG - T3SS effector E3 ubiquitin-protein ligase NleG, at 926,415 to 927,062 nleG JDDGAC_05255: JDDGAC_05255 - hypothetical protein, at 927,817 to 928,086 _05255 JDDGAC_05260: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 928,391 to 928,771 tnpB JDDGAC_05265: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 928,768 to 929,115 tnpB Position (kb) 927 928 929Strain fitness (log2 ratio) -2 -1 0 1at 927.412 kb on + strandat 927.432 kb on + strandat 927.677 kb on + strandat 927.728 kb on - strandat 927.894 kb on + strand, within JDDGAC_05255at 928.033 kb on + strand, within JDDGAC_05255at 928.228 kb on + strandat 928.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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927,412 + -0.9
927,432 + -0.8
927,677 + -0.5
927,728 - +0.4
927,894 + JDDGAC_05255 0.29 -0.4
928,033 + JDDGAC_05255 0.80 -2.1
928,228 + -1.0
928,267 - +0.5

Or see this region's nucleotide sequence