Strain Fitness in Escherichia coli ECRC98 around JDDGAC_05215

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrpCF and trpB are separated by 11 nucleotidestrpB and trpA overlap by 1 nucleotides JDDGAC_05210: trpCF - bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF, at 917,104 to 918,462 trpCF JDDGAC_05215: trpB - tryptophan synthase subunit beta, at 918,474 to 919,667 trpB JDDGAC_05220: trpA - tryptophan synthase subunit alpha, at 919,667 to 920,473 trpA Position (kb) 918 919 920Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 917.507 kb on + strand, within trpCFat 917.507 kb on + strand, within trpCFat 917.510 kb on + strand, within trpCFat 917.735 kb on + strand, within trpCFat 917.757 kb on + strand, within trpCFat 917.757 kb on + strand, within trpCFat 917.757 kb on + strand, within trpCFat 917.758 kb on - strand, within trpCFat 917.758 kb on - strand, within trpCFat 917.758 kb on - strand, within trpCFat 917.879 kb on + strand, within trpCFat 917.879 kb on + strand, within trpCFat 917.880 kb on - strand, within trpCFat 918.023 kb on - strand, within trpCFat 918.124 kb on + strand, within trpCFat 918.124 kb on + strand, within trpCFat 918.124 kb on + strand, within trpCFat 918.125 kb on - strand, within trpCFat 918.179 kb on + strand, within trpCFat 918.225 kb on + strand, within trpCFat 918.225 kb on + strand, within trpCFat 918.226 kb on - strand, within trpCFat 918.229 kb on + strand, within trpCFat 918.284 kb on + strand, within trpCFat 918.285 kb on - strand, within trpCFat 918.458 kb on - strandat 918.485 kb on - strandat 918.520 kb on - strandat 918.520 kb on - strandat 918.520 kb on - strandat 918.628 kb on - strand, within trpBat 918.731 kb on + strand, within trpBat 918.871 kb on - strand, within trpBat 919.015 kb on - strand, within trpBat 919.029 kb on + strand, within trpBat 919.030 kb on - strand, within trpBat 919.030 kb on - strand, within trpBat 919.031 kb on + strand, within trpBat 919.286 kb on - strand, within trpBat 919.309 kb on - strand, within trpBat 919.443 kb on + strand, within trpBat 919.585 kb on + strandat 919.585 kb on + strandat 919.641 kb on - strandat 919.971 kb on - strand, within trpAat 920.164 kb on - strand, within trpAat 920.184 kb on - strand, within trpAat 920.306 kb on - strand, within trpAat 920.326 kb on - strand, within trpAat 920.550 kb on - strandat 920.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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917,507 + trpCF JDDGAC_05210 0.30 -3.9
917,507 + trpCF JDDGAC_05210 0.30 -1.4
917,510 + trpCF JDDGAC_05210 0.30 -2.6
917,735 + trpCF JDDGAC_05210 0.46 -2.0
917,757 + trpCF JDDGAC_05210 0.48 -3.4
917,757 + trpCF JDDGAC_05210 0.48 -5.4
917,757 + trpCF JDDGAC_05210 0.48 -2.7
917,758 - trpCF JDDGAC_05210 0.48 -1.5
917,758 - trpCF JDDGAC_05210 0.48 -3.0
917,758 - trpCF JDDGAC_05210 0.48 -3.2
917,879 + trpCF JDDGAC_05210 0.57 -3.7
917,879 + trpCF JDDGAC_05210 0.57 -0.7
917,880 - trpCF JDDGAC_05210 0.57 -1.1
918,023 - trpCF JDDGAC_05210 0.68 -2.2
918,124 + trpCF JDDGAC_05210 0.75 -2.6
918,124 + trpCF JDDGAC_05210 0.75 -3.4
918,124 + trpCF JDDGAC_05210 0.75 +0.3
918,125 - trpCF JDDGAC_05210 0.75 -3.4
918,179 + trpCF JDDGAC_05210 0.79 -2.8
918,225 + trpCF JDDGAC_05210 0.82 -2.3
918,225 + trpCF JDDGAC_05210 0.82 -3.9
918,226 - trpCF JDDGAC_05210 0.83 -3.1
918,229 + trpCF JDDGAC_05210 0.83 +0.7
918,284 + trpCF JDDGAC_05210 0.87 -0.8
918,285 - trpCF JDDGAC_05210 0.87 -0.9
918,458 - -3.2
918,485 - -0.1
918,520 - -3.6
918,520 - -1.5
918,520 - -2.4
918,628 - trpB JDDGAC_05215 0.13 -3.3
918,731 + trpB JDDGAC_05215 0.22 -3.7
918,871 - trpB JDDGAC_05215 0.33 -0.4
919,015 - trpB JDDGAC_05215 0.45 -4.2
919,029 + trpB JDDGAC_05215 0.46 -3.4
919,030 - trpB JDDGAC_05215 0.47 -1.9
919,030 - trpB JDDGAC_05215 0.47 -2.4
919,031 + trpB JDDGAC_05215 0.47 -3.4
919,286 - trpB JDDGAC_05215 0.68 -1.0
919,309 - trpB JDDGAC_05215 0.70 -2.8
919,443 + trpB JDDGAC_05215 0.81 -2.6
919,585 + -3.8
919,585 + -2.9
919,641 - -1.9
919,971 - trpA JDDGAC_05220 0.38 -1.8
920,164 - trpA JDDGAC_05220 0.62 -2.2
920,184 - trpA JDDGAC_05220 0.64 -0.3
920,306 - trpA JDDGAC_05220 0.79 -1.6
920,326 - trpA JDDGAC_05220 0.82 -3.3
920,550 - +0.2
920,595 - +0.5

Or see this region's nucleotide sequence