Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_04915 and ycjN are separated by 48 nucleotides ycjN and ycjM are separated by 13 nucleotides ycjM and JDDGAC_04930 overlap by 1 nucleotides JDDGAC_04930 and pspE are separated by 209 nucleotides pspE and pspD are separated by 74 nucleotides
JDDGAC_04915: JDDGAC_04915 - ABC transporter substrate-binding protein, at 856,899 to 857,513
_04915
JDDGAC_04920: ycjN - Putative ABC transporter periplasmic-binding protein YcjN, at 857,562 to 858,191
ycjN
JDDGAC_04925: ycjM - Glucosylglycerate phosphorylase, at 858,205 to 859,509
ycjM
JDDGAC_04930: JDDGAC_04930 - Alpha-amylase, at 859,509 to 859,883
_04930
JDDGAC_04935: pspE - thiosulfate sulfurtransferase PspE, at 860,093 to 860,407
pspE
JDDGAC_04940: pspD - phage shock protein PspD, at 860,482 to 860,703
pspD
Position (kb) 858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 857.308 kb on + strand, within JDDGAC_04915 at 857.389 kb on + strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.495 kb on - strand at 857.898 kb on - strand, within ycjN at 857.898 kb on - strand, within ycjN at 857.977 kb on + strand, within ycjN at 857.978 kb on - strand, within ycjN at 858.106 kb on - strand, within ycjN at 858.821 kb on - strand, within ycjM at 858.976 kb on + strand, within ycjM at 859.040 kb on + strand, within ycjM at 859.040 kb on + strand, within ycjM at 859.041 kb on - strand, within ycjM at 859.090 kb on - strand, within ycjM at 859.185 kb on + strand, within ycjM at 860.022 kb on + strand at 860.022 kb on + strand at 860.155 kb on - strand, within pspE at 860.282 kb on - strand, within pspE at 860.314 kb on - strand, within pspE at 860.410 kb on - strand at 860.410 kb on - strand at 860.421 kb on + strand at 860.509 kb on - strand, within pspD
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 857,308 + JDDGAC_04915 0.67 +1.1 857,389 + JDDGAC_04915 0.80 +1.6 857,390 - JDDGAC_04915 0.80 +1.3 857,390 - JDDGAC_04915 0.80 -0.8 857,390 - JDDGAC_04915 0.80 +0.8 857,390 - JDDGAC_04915 0.80 -0.6 857,390 - JDDGAC_04915 0.80 +0.1 857,390 - JDDGAC_04915 0.80 +0.0 857,495 - -0.0 857,898 - ycjN JDDGAC_04920 0.53 +0.8 857,898 - ycjN JDDGAC_04920 0.53 +0.7 857,977 + ycjN JDDGAC_04920 0.66 +2.1 857,978 - ycjN JDDGAC_04920 0.66 +3.3 858,106 - ycjN JDDGAC_04920 0.86 +0.0 858,821 - ycjM JDDGAC_04925 0.47 -2.2 858,976 + ycjM JDDGAC_04925 0.59 -3.0 859,040 + ycjM JDDGAC_04925 0.64 -0.8 859,040 + ycjM JDDGAC_04925 0.64 -3.5 859,041 - ycjM JDDGAC_04925 0.64 +0.4 859,090 - ycjM JDDGAC_04925 0.68 -1.7 859,185 + ycjM JDDGAC_04925 0.75 -0.3 860,022 + -2.0 860,022 + +1.0 860,155 - pspE JDDGAC_04935 0.20 +0.7 860,282 - pspE JDDGAC_04935 0.60 +1.1 860,314 - pspE JDDGAC_04935 0.70 +0.7 860,410 - +1.0 860,410 - +0.6 860,421 + +0.3 860,509 - pspD JDDGAC_04940 0.12 +0.9
Or see this region's nucleotide sequence