Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yddE and JDDGAC_03935 are separated by 95 nucleotides JDDGAC_03935 and nhoA overlap by 1 nucleotides nhoA and yddH are separated by 172 nucleotides yddH and yddH are separated by 3 nucleotides yddH and pptA are separated by 3 nucleotides
JDDGAC_03930: yddE - PhzF family isomerase, at 684,103 to 684,996
yddE
JDDGAC_03935: JDDGAC_03935 - N-hydroxyarylamine O-acetyltransferase, at 685,092 to 685,202
_03935
JDDGAC_03940: nhoA - N-hydroxyarylamine O-acetyltransferase, at 685,202 to 685,936
nhoA
JDDGAC_03945: yddH - Uncharacterized protein YddH, at 686,109 to 686,231
yddH
JDDGAC_03950: yddH - Uncharacterized protein YddH, at 686,235 to 686,678
yddH
JDDGAC_03955: pptA - tautomerase PptA, at 686,682 to 686,909
pptA
Position (kb) 685
686 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 684.312 kb on + strand, within yddE at 684.333 kb on - strand, within yddE at 684.343 kb on + strand, within yddE at 684.343 kb on + strand, within yddE at 684.343 kb on + strand, within yddE at 684.344 kb on - strand, within yddE at 684.348 kb on - strand, within yddE at 684.363 kb on - strand, within yddE at 684.363 kb on - strand, within yddE at 684.756 kb on + strand, within yddE at 684.756 kb on + strand, within yddE at 684.824 kb on + strand, within yddE at 684.855 kb on + strand, within yddE at 685.212 kb on + strand at 685.213 kb on - strand at 685.213 kb on - strand at 685.376 kb on - strand, within nhoA at 685.387 kb on - strand, within nhoA at 685.387 kb on - strand, within nhoA at 685.423 kb on - strand, within nhoA at 685.450 kb on + strand, within nhoA at 685.451 kb on - strand, within nhoA at 685.874 kb on - strand at 685.968 kb on - strand at 686.059 kb on + strand at 686.060 kb on - strand at 686.060 kb on - strand at 686.075 kb on - strand at 686.135 kb on - strand, within yddH at 686.155 kb on + strand, within yddH at 686.280 kb on - strand, within yddH at 686.313 kb on - strand, within yddH at 686.313 kb on - strand, within yddH at 686.572 kb on + strand, within yddH at 686.683 kb on + strand at 686.747 kb on + strand, within pptA at 686.891 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 684,312 + yddE JDDGAC_03930 0.23 +1.0 684,333 - yddE JDDGAC_03930 0.26 +2.2 684,343 + yddE JDDGAC_03930 0.27 -1.5 684,343 + yddE JDDGAC_03930 0.27 -2.3 684,343 + yddE JDDGAC_03930 0.27 +0.7 684,344 - yddE JDDGAC_03930 0.27 +0.6 684,348 - yddE JDDGAC_03930 0.27 -1.0 684,363 - yddE JDDGAC_03930 0.29 -0.7 684,363 - yddE JDDGAC_03930 0.29 -1.8 684,756 + yddE JDDGAC_03930 0.73 -2.4 684,756 + yddE JDDGAC_03930 0.73 +0.8 684,824 + yddE JDDGAC_03930 0.81 +0.4 684,855 + yddE JDDGAC_03930 0.84 -0.2 685,212 + -1.4 685,213 - -1.0 685,213 - -2.0 685,376 - nhoA JDDGAC_03940 0.24 +1.9 685,387 - nhoA JDDGAC_03940 0.25 -0.3 685,387 - nhoA JDDGAC_03940 0.25 -3.3 685,423 - nhoA JDDGAC_03940 0.30 -0.1 685,450 + nhoA JDDGAC_03940 0.34 -5.0 685,451 - nhoA JDDGAC_03940 0.34 +0.3 685,874 - +1.9 685,968 - -0.8 686,059 + +0.4 686,060 - +0.6 686,060 - +0.7 686,075 - +1.5 686,135 - yddH JDDGAC_03945 0.21 -0.6 686,155 + yddH JDDGAC_03945 0.37 +0.2 686,280 - yddH JDDGAC_03950 0.10 +0.1 686,313 - yddH JDDGAC_03950 0.18 -2.2 686,313 - yddH JDDGAC_03950 0.18 +0.3 686,572 + yddH JDDGAC_03950 0.76 +1.9 686,683 + +0.4 686,747 + pptA JDDGAC_03955 0.29 +1.9 686,891 + +1.6
Or see this region's nucleotide sequence