Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pphA and yebW are separated by 0 nucleotides yebW and yebV are separated by 20 nucleotides yebV and rsmF are separated by 117 nucleotides rsmF and yebT overlap by 1 nucleotides
JDDGAC_01000: pphA - protein-serine/threonine phosphatase, at 164,439 to 165,095
pphA
JDDGAC_01005: yebW - Uncharacterized protein YebW, at 165,096 to 165,371
yebW
JDDGAC_01010: yebV - Uncharacterized protein YebV, at 165,392 to 165,628
yebV
JDDGAC_01015: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 165,746 to 167,266
rsmF
JDDGAC_01020: yebT - lipid-binding membrane homeostasis protein YebT, at 167,266 to 169,899
yebT
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 164.751 kb on - strand, within pphA at 164.765 kb on + strand, within pphA at 164.819 kb on + strand, within pphA at 164.831 kb on - strand, within pphA at 164.970 kb on - strand, within pphA at 165.040 kb on - strand at 165.042 kb on - strand at 165.042 kb on - strand at 165.110 kb on - strand at 165.110 kb on - strand at 165.110 kb on - strand at 165.514 kb on + strand, within yebV at 165.515 kb on - strand, within yebV at 165.515 kb on - strand, within yebV at 165.515 kb on - strand, within yebV at 165.518 kb on + strand, within yebV at 165.519 kb on - strand, within yebV at 165.519 kb on - strand, within yebV at 165.536 kb on - strand, within yebV at 165.694 kb on - strand at 166.380 kb on - strand, within rsmF at 166.444 kb on + strand, within rsmF at 167.267 kb on + strand at 167.268 kb on - strand at 167.401 kb on - strand at 167.656 kb on + strand, within yebT at 167.657 kb on - strand, within yebT at 167.746 kb on - strand, within yebT at 167.746 kb on - strand, within yebT at 167.748 kb on - strand, within yebT at 167.760 kb on + strand, within yebT at 167.761 kb on - strand, within yebT at 167.846 kb on + strand, within yebT at 167.847 kb on - strand, within yebT at 167.988 kb on + strand, within yebT at 168.030 kb on - strand, within yebT at 168.037 kb on - strand, within yebT at 168.091 kb on - strand, within yebT at 168.091 kb on - strand, within yebT
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 164,751 - pphA JDDGAC_01000 0.47 -1.1 164,765 + pphA JDDGAC_01000 0.50 -1.1 164,819 + pphA JDDGAC_01000 0.58 +1.8 164,831 - pphA JDDGAC_01000 0.60 +0.6 164,970 - pphA JDDGAC_01000 0.81 -1.8 165,040 - -0.8 165,042 - -0.7 165,042 - -0.6 165,110 - +0.4 165,110 - +0.8 165,110 - +0.4 165,514 + yebV JDDGAC_01010 0.51 +0.4 165,515 - yebV JDDGAC_01010 0.52 +0.4 165,515 - yebV JDDGAC_01010 0.52 -0.9 165,515 - yebV JDDGAC_01010 0.52 +1.3 165,518 + yebV JDDGAC_01010 0.53 +0.1 165,519 - yebV JDDGAC_01010 0.54 +0.6 165,519 - yebV JDDGAC_01010 0.54 +0.0 165,536 - yebV JDDGAC_01010 0.61 -0.5 165,694 - +0.8 166,380 - rsmF JDDGAC_01015 0.42 -3.2 166,444 + rsmF JDDGAC_01015 0.46 -1.6 167,267 + -0.5 167,268 - +0.7 167,401 - +0.1 167,656 + yebT JDDGAC_01020 0.15 +1.4 167,657 - yebT JDDGAC_01020 0.15 +2.3 167,746 - yebT JDDGAC_01020 0.18 -3.3 167,746 - yebT JDDGAC_01020 0.18 -1.0 167,748 - yebT JDDGAC_01020 0.18 -2.9 167,760 + yebT JDDGAC_01020 0.19 -0.4 167,761 - yebT JDDGAC_01020 0.19 -2.9 167,846 + yebT JDDGAC_01020 0.22 +1.0 167,847 - yebT JDDGAC_01020 0.22 -0.9 167,988 + yebT JDDGAC_01020 0.27 +0.0 168,030 - yebT JDDGAC_01020 0.29 -1.5 168,037 - yebT JDDGAC_01020 0.29 -0.5 168,091 - yebT JDDGAC_01020 0.31 +0.1 168,091 - yebT JDDGAC_01020 0.31 +0.6
Or see this region's nucleotide sequence